RetrogeneDB ID:

retro_etel_893

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_181114:12355..12788(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000014252
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_893
ATGACGCCGACAGTGCTGGTGCTGAAGGCACGGACTGCTGCGCTGTTGAGCCCCCTGCAAGCACCCACTCTAGCTGTCAG
GTACACGTCCAAGAAGACAGAGGGCAGCTCCCAAAACCTTGGTGAGAAGTCACCTGGCAAACACTTTGGCATCAAGAAAA
TGGAAGGGCACTACGTTCATGCTGACAGCATCCTGGACACTCAGGGCAAATGCCACTGGCACCCAGGAGCCACATGGGGC
TGGGGAAGAAGTGCCTGTATGCCTTAGAAGATGGATAGTCCACTGCACGAAGGGGGTCTATGTGCCCAGCCCCAACAACA
CAGAAGCCATGGATCTGGTCACCAGGGGGCCCAAGGGTGCTGTGCTCTACAAGACTTTTATCCATGTGGTCTCCACCAAC
CCTGAGGGCACCGTCAAGCTGGCAGCTATGCTT

ORF - retro_etel_893 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMASAVLALRARPAVTALLSPLQAPALAVRYASKKTGGSSKNLGGKSPGKHFGIKKMEGHYVHAGNILGTQ
M...VL.L.AR.A..ALLSPLQAP.LAVRY.SKKT.GSS.NLG.KSPGKHFGIKKMEGHYVHA..IL.TQ
RetrocopyMTPTVLVLKARTA--ALLSPLQAPTLAVRYTSKKTEGSSQNLGEKSPGKHFGIKKMEGHYVHADSILDTQ
ParentalRKFRWHPGA-HVGLGKRKCLYALEDG-IVHYTKDVYVPSPNNAEAMDLVTRLPKGAVLYKTFVHVLPTKP
.K..WHPGA.H.GLGK.KCLYALEDG.IVH.TK.VYVPSPNN.EAMDLVTR.PKGAVLYKTF.HV..T.P
RetrocopyGKCHWHPGA<HMGLGK-KCLYALEDG<IVHCTKGVYVPSPNNTEAMDLVTRGPKGAVLYKTFIHVVSTNP
ParentalEGTFKLVAML
EGT.KL.AML
RetrocopyEGTVKLAAML

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_893 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000170311 retrocopy
Choloepus hoffmanni ENSCHOG000000051031 retrocopy
Callithrix jacchus ENSCJAG000000188512 retrocopies
Dasypus novemcinctus ENSDNOG000000238452 retrocopies
Erinaceus europaeus ENSEEUG000000105493 retrocopies
Echinops telfairi ENSETEG00000014252 2 retrocopies
retro_etel_13, retro_etel_893 ,
Microcebus murinus ENSMICG000000096981 retrocopy
Macaca mulatta ENSMMUG000000172311 retrocopy
Mus musculus ENSMUSG000000244142 retrocopies
Oryctolagus cuniculus ENSOCUG000000046012 retrocopies
Otolemur garnettii ENSOGAG000000053851 retrocopy



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