RetrogeneDB ID: | retro_fcat_1690 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:28451811..28452369(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM49B | ||
Ensembl ID: | ENSFCAG00000015625 | ||
Aliases: | None | ||
Description: | family with sequence similarity 49, member B [Source:HGNC Symbol;Acc:25216] |
Percent Identity: | 83.68 % |
Parental protein coverage: | 57.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | FTLRFDELKMTNPAIQNDFS-YYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATT |
FTLR.D.LKMTNP.IQNDF..YYRRTLS.MRINNV.A.GENEVNN.LANR.SLFYA.A..MLKT.SDATT | |
Retrocopy | FTLRLDKLKMTNPSIQNDFC<YYRRTLSLMRINNVAAKGENEVNNKLANRLSLFYAGAVSMLKT*SDATT |
Parental | KFVSENKNLPI-ENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAK |
KFVSENKNLP..ENTTDCLST.ASVCRV.LETPEYRSRFTNEETVSFCLRVM.GVIILYD....VGAFAK | |
Retrocopy | KFVSENKNLPK<ENTTDCLSTTASVCRVTLETPEYRSRFTNEETVSFCLRVMLGVIILYDTYNLVGAFAK |
Parental | TSKIDMKGCIKVLKDQPPNSVEGLL-NALRYTTKHLNDETTSKQIRSMLQ |
TSKIDMKGCIKVLKDQ.PNSVE.LL..ALR.TTKHLNDE..SKQI.SMLQ | |
Retrocopy | TSKIDMKGCIKVLKDQYPNSVESLL<IALR*TTKHLNDEAISKQIGSMLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 75 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .20 RPM |
SRP017611_liver | 0 .00 RPM | 9 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009323 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000005160 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015647 | 1 retrocopy | |
Felis catus | ENSFCAG00000015625 | 1 retrocopy |
retro_fcat_1690 ,
|
Oryctolagus cuniculus | ENSOCUG00000013690 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002866 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000005959 | 1 retrocopy |