RetrogeneDB ID: | retro_pcap_40 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_1803:114368..114911(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM49B | ||
Ensembl ID: | ENSPCAG00000002866 | ||
Aliases: | None | ||
Description: | family with sequence similarity 49, member B [Source:HGNC Symbol;Acc:25216] |
Percent Identity: | 93.37 % |
Parental protein coverage: | 59.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHP |
.GNLLKVLTCTDLE.GPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHP | |
Retrocopy | IGNLLKVLTCTDLEHGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHP |
Parental | ADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTL |
A.EKLQEKAWGAVVPLV.KLKKFYEFSQRLEAALRGLLGALTSTPYS.TQ.LERE.ALAKQFAEILHFTL | |
Retrocopy | AYEKLQEKAWGAVVPLVRKLKKFYEFSQRLEAALRGLLGALTSTPYSLTQYLEREHALAKQFAEILHFTL |
Parental | RFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNN |
RF.ELKMTNPAIQNDFSYY.RT.SR.RINNVPAEGENE.NN | |
Retrocopy | RFAELKMTNPAIQNDFSYYKRTVSRTRINNVPAEGENEINN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009323 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000005160 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015647 | 1 retrocopy | |
Felis catus | ENSFCAG00000015625 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013690 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002866 | 3 retrocopies |
retro_pcap_293, retro_pcap_332, retro_pcap_40 ,
|
Sus scrofa | ENSSSCG00000005959 | 1 retrocopy |