RetrogeneDB ID: | retro_fcat_333 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:85608839..85609661(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMX1 | ||
Ensembl ID: | ENSFCAG00000002780 | ||
Aliases: | None | ||
Description: | thioredoxin-related transmembrane protein 1 [Source:HGNC Symbol;Acc:15487] |
Percent Identity: | 68.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 8 |
Parental | MTASRSPVV-PVAVLLLLACGAPWTHGRRSDVRIIT-DENWKELLEGEWMIEFYAPWCPACQNLQPEWES |
MT.SRS..V.PVA.LLLL.CG..WTH...SDV..I....N..ELLEGEWMIEFY.PWC..CQNLQPEW.S | |
Retrocopy | MTPSRSLMV<PVAGLLLLFCGVSWTHVQ*SDVPNIM<GKNRRELLEGEWMIEFYVPWCLSCQNLQPEWRS |
Parental | FAEWGEDLEVNVAKVDVTEQPGLSGRFIITALPTIYHCKDGEFRRYQGPRTKKDFINFVSE-KEWKSIEP |
FA..GE.LEVNVAK.DV.EQPGLSG.FIITALP.IY.C.DGEFR.YQG.R.KKDFIN...E.K..K...P | |
Retrocopy | FA*RGEHLEVNVAKGDVIEQPGLSGWFIITALPSIYYC*DGEFRCYQGSRNKKDFINYK*E<KSGKVLNP |
Parental | -VSSWFGPGSVLMSSMSALFQLSMWIRTCHNYFIEDLGLPVWGSYTVFA-LATLLSGLLLGLCMIFVADC |
..SSWFGP.SVLM.SM.ALFQLS.WIRTC.NYFIEDL.L.VWG..T.FA.LATLLSGL.LGLC.IFV..C | |
Retrocopy | <ISSWFGPDSVLMNSMAALFQLSSWIRTCCNYFIEDL*LWVWG*CTIFA>LATLLSGLSLGLCIIFVLHC |
Parental | LFPSKRRR-PQPYPSSKEKLLPESSQPLKKVEEEQEADEEDVSEEEAGS-KEGTNKDFPRNAI-RQRSVG |
LFPSKR.R...PYPS....LL.ESSQPLKKV...QEA..E..SEEEA...KE.T...FP.NA..RQ..VG | |
Retrocopy | LFPSKRYR<MKPYPSPPK*LLSESSQPLKKV-Q*QEA-HENASEEEAEG<KEPTD--FPQNAT<RQCPVG |
Parental | PSLATDQS |
PSL.TD.S | |
Retrocopy | PSLFTDKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .95 RPM |
SRP017611_liver | 0 .00 RPM | 10 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015041 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014626 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006893 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016496 | 1 retrocopy | |
Felis catus | ENSFCAG00000002780 | 1 retrocopy |
retro_fcat_333 ,
|
Homo sapiens | ENSG00000139921 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009768 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013251 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001901 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003980 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005810 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006339 | 2 retrocopies |