RetrogeneDB ID: | retro_nleu_2524 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397367.1:3946670..3947233(+) | ||
Located in intron of: | ENSNLEG00000011288 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMX1 | ||
Ensembl ID: | ENSNLEG00000012362 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.42 % |
Parental protein coverage: | 67.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NVRVITDENWRELLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNVAKVDVTEQPGLSGRFIITA |
.V..I.DEN.R.LLEGDWMIEF.A.W.PACQ.L.PEWESFAEWGE.LEVNVAKVDVT.QPGLS..FIITA | |
Retrocopy | DVCIIMDEN*RQLLEGDWMIEFCALWYPACQKLPPEWESFAEWGEVLEVNVAKVDVTGQPGLSRQFIITA |
Parental | L-PTIYHCKDGEFRRYQGPRTKKDFINFISDKEWKSIEPVSSWFGPGSVLMSSMSALFQLSMWIRTCHNY |
L.PTIYHCKDGEFR..QGPRTKKDF.NFI.D..WKSIEP..SWFG.GS.LMSS.SALFQLSMWI..CHNY | |
Retrocopy | L<PTIYHCKDGEFRHHQGPRTKKDFRNFINDEKWKSIEPIPSWFGSGSFLMSSRSALFQLSMWIKICHNY |
Parental | FIEDLGLPVWGSYTVFALATLFSGLSLGLCMIFVADCLCPSKRRRPQPY |
FIEDL.LPVW.SYTVFALA.L.SGL.LGL.MIFVADCLCPSKR.R.QPY | |
Retrocopy | FIEDLRLPVWKSYTVFALAILLSGLLLGLFMIFVADCLCPSKRHRLQPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015041 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014626 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006893 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016496 | 1 retrocopy | |
Felis catus | ENSFCAG00000002780 | 1 retrocopy | |
Homo sapiens | ENSG00000139921 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009768 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013251 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001901 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012362 | 2 retrocopies |
retro_nleu_1976, retro_nleu_2524 ,
|
Oryctolagus cuniculus | ENSOCUG00000003980 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005810 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006339 | 2 retrocopies |