RetrogeneDB ID: retro_fcat_521

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B1:29238923..29239273(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BIK
• Ensembl ID: ENSFCAG00000012125
• Aliases: None
• Description: BIK1 [Source:UniProtKB/TrEMBL;Acc:Q005V5]

Sequence

>retro_fcat_521
ATGTCTCTGGAAGTACCCCTCTCCAGCGCCGTCATTTTGAGCACCTTCCTGCAAGAGCATAGCCCAGAAATTCTGGACCT
TCCTGGCATGACCGATCTCATGGAGTTCCTATGTCCTGGGCCCTCCCCTAACAGCAACAAACCCGACGACGTGGCCATGT
GGCAGCCTTCATCGGGGACAAGATGGAAGTCAGGTGGATGCTGTCCCACATCAGCGAGCTGCCCGGGCTGGCCAGGTACA
GCCTGGCCTTCACCCACAAGCAGACAGGCCTGACAGGTGCTCTTAGAAGTTTCTCGGATGGTCTCACTAATCTCAGGGAG
AACATAAGGATCTGGAGATTCCTGCCCCTA

Alignment

ORF - retro_fcat_521 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.19 %
• Parental protein coverage: 79.05 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSHAGPLSRNVFLSTFLQEHGPEVLDVPGMTDLVEYYDPGPSPNSNSPDDVAMR-LAFIGDEMEVRWMMP
          MS...PLS..V.LSTFLQEH.PE.LD.PGMTDL.E...PGPSPNSN.PDDVAM...AFIGD.MEVRWM..
Retrocopy MSLEVPLSSAVILSTFLQEHSPEILDLPGMTDLMEFLCPGPSPNSNKPDDVAMW<AAFIGDKMEVRWMLS

Parental  RVGELPGMAVYSLAFTYNQTGLRGVLRSLMDGLANLRENIRIWGFLTL
          ...ELPG.A.YSLAFT..QTGL.G.LRS..DGL.NLRENIRIW.FL.L
Retrocopy HISELPGLARYSLAFTHKQTGLTGALRSFSDGLTNLRENIRIWRFLPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	0.23 RPM
SRP017611_kidney	0.00 RPM	0.00 RPM
SRP017611_liver	0.00 RPM	0.51 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_521 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_521 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000018135	1 retrocopy	retro_ecab_872,
Felis catus	ENSFCAG00000012125	1 retrocopy	retro_fcat_521 ,