RetrogeneDB ID: | retro_fcat_570 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:136345929..136346698(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL8 | ||
Ensembl ID: | ENSFCAG00000026288 | ||
Aliases: | None | ||
Description: | ribosomal protein L8 [Source:HGNC Symbol;Acc:10368] |
Percent Identity: | 69.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 6 |
Parental | MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK |
MG..I.G.RK.AGSVF.AH.KH.KGAA.L.A.DFAE..GYI.GI.KDIIHD.G.G.PL..VVF.D.Y.FK | |
Retrocopy | MGHIILG*RKDAGSVFHAHMKHGKGAACLLAMDFAEKLGYIRGIMKDIIHDQGGGEPLTEVVF*DLYWFK |
Parental | KRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGD-RGKLARASGNYAT-VIS |
K..ELFI...GI.TG.FVYCGKKAQLNIGNVL.VGTMP..TIV.CLEEK.GD..GKLA.ASGN.AT..IS | |
Retrocopy | KWQELFITPNGIYTGYFVYCGKKAQLNIGNVLLVGTMPKVTIVYCLEEKLGD<LGKLAQASGNDAT<FIS |
Parental | HNPET-KKTRVKLPSGS--KKVISSANRAV-VGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAM |
HNPET.KKT.VKL.S.....KVISSANR...V.VVAGGG..DK.ILKAG.AYHKYKAKR.C.P...GVAM | |
Retrocopy | HNPET>KKTQVKLSSAT*EIKVISSANRTM<VDVVAGGGHVDKTILKAGCAYHKYKAKRSC*PHILGVAM |
Parental | NPV-EHPFGGGNHQHI-GKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN |
NPV.EHPFGGG.HQHI..KP.TI.RD.PAG..VGLIAA..T.....T.TV.EKEN | |
Retrocopy | NPV>EHPFGGGKHQHI<HKPCTICRDTPAGCIVGLIAAYQTS--GRT*TV*EKEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 86 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 295 .88 RPM |
SRP017611_liver | 0 .00 RPM | 155 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000017933 | 1 retrocopy | |
Bos taurus | ENSBTAG00000026327 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021388 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000009300 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007104 | 4 retrocopies | |
Felis catus | ENSFCAG00000026288 | 1 retrocopy |
retro_fcat_570 ,
|
Homo sapiens | ENSG00000161016 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048523 | 2 retrocopies |