Parental gene: | ENSCJAG00000021388 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 16:49819266..49821733(+) |
>ENSCJAG00000021388
ATGGGCCGCGTGATCCGTGGACAGAGGAAGGGTGCCGGGTCTGTGTTCCGCGCGCACGTGAAGCACCGTAAGGGCGCCGC
GCGCCTGCGCGCCGTGGATTTCGCCGAGCGGCACGGCTACATCAAGGGCATCGTGAAGGACATCATCCACGACCCGGGCC
GCGGCGCGCCCCTCGCCAAGGTGGTCTTCCGGGATCCGTACCGGTTTAAGAAGCGGACGGAGCTGTTCATTGCCGCCGAG
GGCATTCATACGGGCCAGTTTGTGTACTGTGGCAAGAAGGCCCAGCTCAACATTGGCAATGTGCTCCCCGTGGGCACCAT
GCCTGAGGGTACGATCGTGTGTTGCCTGGAGGAGAAGCCTGGAGACCGCGGCAAGCTGGCCCGGGCATCAGGGAACTATG
CCACCGTTATCTCCCACAACCCTGAGACCAAGAAGACCCGTGTGAAGTTGCCCTCTGGCTCCAAGAAGGTTATCTCCTCA
GCCAACAGAGCTGTGGTTGGTGTGGTGGCTGGAGGTGGCCGAATTGACAAACCCATCTTGAAGGCTGGCCGGGCCTACCA
CAAATACAAGGCAAAGAGGAACTGCTGGCCACGAGTACGGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTTGGTGGTG
GCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCC
CGTCGGACTGGACGTCTCCGGGGAACCAAGACTGTACAGGAGAAAGAGAACTAG
ATGGGCCGCGTGATCCGTGGACAGAGGAAGGGTGCCGGGTCTGTGTTCCGCGCGCACGTGAAGCACCGTAAGGGCGCCGC
GCGCCTGCGCGCCGTGGATTTCGCCGAGCGGCACGGCTACATCAAGGGCATCGTGAAGGACATCATCCACGACCCGGGCC
GCGGCGCGCCCCTCGCCAAGGTGGTCTTCCGGGATCCGTACCGGTTTAAGAAGCGGACGGAGCTGTTCATTGCCGCCGAG
GGCATTCATACGGGCCAGTTTGTGTACTGTGGCAAGAAGGCCCAGCTCAACATTGGCAATGTGCTCCCCGTGGGCACCAT
GCCTGAGGGTACGATCGTGTGTTGCCTGGAGGAGAAGCCTGGAGACCGCGGCAAGCTGGCCCGGGCATCAGGGAACTATG
CCACCGTTATCTCCCACAACCCTGAGACCAAGAAGACCCGTGTGAAGTTGCCCTCTGGCTCCAAGAAGGTTATCTCCTCA
GCCAACAGAGCTGTGGTTGGTGTGGTGGCTGGAGGTGGCCGAATTGACAAACCCATCTTGAAGGCTGGCCGGGCCTACCA
CAAATACAAGGCAAAGAGGAACTGCTGGCCACGAGTACGGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTTGGTGGTG
GCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCC
CGTCGGACTGGACGTCTCCGGGGAACCAAGACTGTACAGGAGAAAGAGAACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 167 .08 RPM |
| SRP051959_skeletal_muscle | 140 .83 RPM |
| SRP051959_lymph_node | 246 .09 RPM |
| SRP051959_lung | 129 .60 RPM |
| SRP051959_liver | 130 .35 RPM |
| SRP051959_kidney | 110 .71 RPM |
| SRP051959_heart | 100 .28 RPM |
| SRP051959_colon | 122 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000017933 | ortholog_many2many | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000005395 | possible_ortholog | 1 retrogene | |
| Bos taurus | ENSBTAG00000026327 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000001677 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003854 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000009300 | ortholog_one2many | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000007104 | possible_ortholog | 4 retrogenes | |
| Felis catus | ENSFCAG00000026288 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000161016 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013824 | possible_ortholog | 9 retrogenes | |
| Macaca mulatta | ENSMMUG00000013379 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000004283 | possible_ortholog | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006022 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010952 | ortholog_one2one | 2 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000002646 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000024716 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000048523 | possible_ortholog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000013568 | possible_ortholog | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013858 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1109 | 99.22 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1169 | 81.29 | 53.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1579 | 77.02 | 61.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2047 | 69.06 | 54.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021388 retrocopies