RetrogeneDB ID: retro_ggor_1345

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 17:42353055..42353455(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000022586
• Aliases: None
• Description: None

Sequence

>retro_ggor_1345
TTGAGGTCAATAAACGGAAACTGCCACAATTTTTATACTGCTATTTCTAAAGATGTCACTTGTAAGGAATTTAAAAAACC
TATTGAATTCTAAAAATATCATATTAATTGATGTTAGAAAGACACGGGAAATTCTGGAGTATGGAAAAATCCCTGGGTCT
ATCAATACACCATTGGATGAGGTAGGTGAAGCTCTACAGATAAACCCAAGAGACTTCAAAGAGAAGTACAATGAAGTAAA
GCCAACCAAATCTGGCAACTTGGTGTTTTCTTTTTTAGCCGGAGTGAGAAGCAAGCAGGCTCTGGGCACTGCAATATCAC
GGGGCTTTCACAGTGCTCAACACTATGCTGGAGGATGGAAAGAGTGGGTAACCTATGAGTTTTCAGAGAAGAGACAAGGA

Alignment

ORF - retro_ggor_1345 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.84 %
• Parental protein coverage: 98.51 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LTSIKGNRHNFYTAISKDVTYKE-LKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNP
          L.SI.GN.HNFYTAISKDVT.KE.LKNLLNSKNI.LIDVR...EILEY.KIP.SIN.PLDEVGEALQ.NP
Retrocopy LRSINGNCHNFYTAISKDVTCKE>LKNLLNSKNIILIDVRKTREILEYGKIPGSINTPLDEVGEALQINP

Parental  RDFKEKYNEVKPSKS-DLVFSYLAGVRSKKALDTAISLGFHSAQHYARGWKEWVTCEFSEKKQG
          RDFKEKYNEVKP.KS..LVFS.LAGVRSK.AL.TAIS.GFHSAQHYA.GWKEWVT.EFSEK.QG
Retrocopy RDFKEKYNEVKPTKSGNLVFSFLAGVRSKQALGTAISRGFHSAQHYAGGWKEWVTYEFSEKRQG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.67 RPM
SRP007412_cerebellum	0.00 RPM	2.17 RPM
SRP007412_heart	0.00 RPM	0.25 RPM
SRP007412_kidney	0.00 RPM	1.06 RPM
SRP007412_liver	0.00 RPM	0.61 RPM
SRP007412_testis	0.00 RPM	1.24 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1345 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1345 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008959	1 retrocopy	retro_amel_1055,
Bos taurus	ENSBTAG00000038931	1 retrocopy	retro_btau_1353,
Canis familiaris	ENSCAFG00000030791	1 retrocopy	retro_cfam_606,
Callithrix jacchus	ENSCJAG00000031571	1 retrocopy	retro_cjac_1967,
Equus caballus	ENSECAG00000024361	1 retrocopy	retro_ecab_791,
Gorilla gorilla	ENSGGOG00000022586	1 retrocopy	retro_ggor_1345 ,
Otolemur garnettii	ENSOGAG00000025707	2 retrocopies	retro_ogar_2601, retro_ogar_527,