RetrogeneDB ID: retro_ogar_2601

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873637.1:1240749..1241214(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000025707
• Aliases: None
• Description: None

Sequence

>retro_ogar_2601
ATGGTGCTGCCGTAGCTGCCACTCAGGACTGCGCACAGGACGGTCCTGGGGTCTCTGGAGGTTGCACTCTGCGGTTTAAA
GTCATTAAAAGGAAGCTGCCACAATTTTTGTACTTCTATTTATAAAGATGTCACTTATAAGGAACTTAAAAACCTGTTGC
GTTCCAAAAGCATTAAGTTAATTGATGTTAGAGAGACATGGGAAATTCATGAGCATGGAAAAATCCCGGGGTCTATCAAT
GTACCACTGGGTGAAGTAGGTGAAGCTCTGCAGATGACCCCGAGAGACTTCAAAGAGAAATACAATGAAGTAAAGCCGTC
CAAATCTGACAGGCTAGTGTTTTCTTGTTTAGCTGGGGTAAGAAGCAAGAAGGCTCTGGACACAGCAGTGTCTCTGGGCT
TTAACAGATCTCAACACTATGCTGGAGGATGGAAGGAATGGGTATCTTTCAGAGTTTCAGAGAAG

Alignment

ORF - retro_ogar_2601 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.9 %
• Parental protein coverage: 97.48 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVLPRLPLGTAHGAVLGSVEAALCGLKSLKGSCHNFCTSVYEDVTYKELKNLLRSKSIKLIDVRETWEIH
          MVLP.LPL.TAH..VLGS.E.ALCGLKSLKGSCHNFCTS.Y.DVTYKELKNLLRSKSIKLIDVRETWEIH
Retrocopy MVLP*LPLRTAHRTVLGSLEVALCGLKSLKGSCHNFCTSIYKDVTYKELKNLLRSKSIKLIDVRETWEIH

Parental  EHGKIPGSINVPLGEVGEALQMTPRDFKEKYNEVKPSKSDSLVFSCLAGVRSKKALDTAVSLGFNRSQHY
          EHGKIPGSINVPLGEVGEALQMTPRDFKEKYNEVKPSKSD.LVFSCLAGVRSKKALDTAVSLGFNRSQHY
Retrocopy EHGKIPGSINVPLGEVGEALQMTPRDFKEKYNEVKPSKSDRLVFSCLAGVRSKKALDTAVSLGFNRSQHY

Parental  AGGWKEWVSYEVSEK
          AGGWKEWVS..VSEK
Retrocopy AGGWKEWVSFRVSEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2601 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008959	1 retrocopy	retro_amel_1055,
Bos taurus	ENSBTAG00000038931	1 retrocopy	retro_btau_1353,
Canis familiaris	ENSCAFG00000030791	1 retrocopy	retro_cfam_606,
Callithrix jacchus	ENSCJAG00000031571	1 retrocopy	retro_cjac_1967,
Equus caballus	ENSECAG00000024361	1 retrocopy	retro_ecab_791,
Gorilla gorilla	ENSGGOG00000022586	1 retrocopy	retro_ggor_1345,
Otolemur garnettii	ENSOGAG00000025707	2 retrocopies	retro_ogar_2601 , retro_ogar_527,