RetrogeneDB ID: | retro_ggor_1683 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:58139500..58139990(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF2S2 | ||
Ensembl ID: | ENSGGOG00000015546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.27 % |
Parental protein coverage: | 50.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | FMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEEDTRKKDASDDLDDLNFFNQKKKKKKTKKIFDID |
FMLDE.GDT..EE..PSE.KE.EPEPTEDKDLEADEED.RK.DA.DD.DDL.FFN...........F.I. | |
Retrocopy | FMLDEGGDT*IEES*PSEIKEMEPEPTEDKDLEADEEDNRKRDAYDDPDDLIFFNXXXXXXXXXXXFHIH |
Parental | EAEEGVKDLKIESDVQEPTEPEDDLDIMLGNKKKKKKNVKFPDEDEILEKDEALEDEDN-KKDDGISFSN |
..EE.VK.LKIESD..EP.EP.DDLDI...NKKK.K.N..F.DE...LEKDEA....D..KKDD.ISFSN | |
Retrocopy | GGEEDVKVLKIESDI*EPAEPGDDLDIV--NKKKEKRNFRFTDENKLLEKDEA*KIKDS>KKDDIISFSN |
Parental | QTGPAWAGSERDYTYEELLNRVFNIM |
QTGP.WA.S.RDYTYE.LLNRVF.IM | |
Retrocopy | QTGPIWANSKRDYTYEKLLNRVFHIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 21 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .37 RPM |
SRP007412_heart | 0 .00 RPM | 8 .69 RPM |
SRP007412_kidney | 0 .00 RPM | 41 .34 RPM |
SRP007412_liver | 0 .00 RPM | 25 .32 RPM |
SRP007412_testis | 0 .00 RPM | 52 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018334 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015439 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001922 | 1 retrocopy | |
Homo sapiens | ENSG00000125977 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015546 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006944 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018095 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002805 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010034 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001417 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013412 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017447 | 1 retrocopy |