RetrogeneDB ID: | retro_ggor_1924 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:33488835..33489126(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLE4 | ||
Ensembl ID: | ENSGGOG00000004491 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.53 % |
Parental protein coverage: | 83.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQ |
P.GEA...QPQAPT.VPGAR.SRLP.A..KAL.KADP..T.AGQ....ILA.A.EL.VETIAKDAYCCAQ | |
Retrocopy | PGGEA*VPQPQAPTRVPGARPSRLPRAPAKALAKADPNETRAGQRTV-ILA*ARELCVETIAKDAYCCAQ |
Parental | QGKRKTLQRRDLDNAIEAVDEFAFLEGT |
Q..RKTLQRRDLDNAIEAVDE.AFLEGT | |
Retrocopy | QVNRKTLQRRDLDNAIEAVDESAFLEGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 5 .36 RPM |
SRP007412_heart | 0 .00 RPM | 9 .19 RPM |
SRP007412_kidney | 0 .08 RPM | 17 .66 RPM |
SRP007412_liver | 0 .03 RPM | 10 .74 RPM |
SRP007412_testis | 0 .10 RPM | 14 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2765 |
Pan troglodytes | retro_ptro_1872 |
Pongo abelii | retro_pabe_2246 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017073 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017156 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000027003 | 1 retrocopy | |
Felis catus | ENSFCAG00000005983 | 1 retrocopy | |
Homo sapiens | ENSG00000115350 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004491 | 1 retrocopy |
retro_ggor_1924 ,
|
Gorilla gorilla | ENSGGOG00000007360 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008356 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001111 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012258 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012105 | 1 retrocopy |