RetrogeneDB ID: retro_ggor_2641

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 8:108173..108578(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF11
• Ensembl ID: ENSGGOG00000004919
• Aliases: None
• Description: None

Sequence

>retro_ggor_2641
CTGAGACGCCCCACCTCAGATGACACTATTGTGCATCTGTCGACAGGGCAGGATCTTAGGCCCCTACTGCCACATATGGA
ACAAGCTCCAGTTCCAGTCTATCACTCAGTACCTGGCCAGCCTCTGTCAGCAATACTGCTGACTGAAGAAGAACAAGTTA
GAATAGCTCAAAGACTAAGCCTTCTACAGTGTCTGCCTGAAGAAGTTTATGACCCTGGAAGAGATAAATCAGAAGAGGAG
ATGCCAGACTGTGTGATCTGTTTACTGGAATTTGTTTGTGGGGACCCCATTCGATGTCTGCCATGCAAACACTTCTTTCA
CCTTGACTGCATAGACACATGGCTGCTGCGATCTTTCACATGTCCCTACTGCCAGGGGCCAGTGGATGCAGCGCTGTCTA
CATCC

Alignment

ORF - retro_ggor_2641 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.52 %
• Parental protein coverage: 87.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVY
          L....SD.......T..D..P..P..EQ.PVPVYH..P.Q...A..LTEEEQ.RIAQR..L.Q.LP..VY
Retrocopy LRRPTSDDTIVHLSTGQDLRPLLPHMEQAPVPVYHSVPGQPLSAILLTEEEQVRIAQRLSLLQCLPEEVY

Parental  DPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS
          DPGRD.SE.....CVIC...FV.GDPIR.LPC.H..HLDCID.WL.RSFTCP.C..PVDAAL..S
Retrocopy DPGRDKSEEEMPDCVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCQGPVDAALSTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	132.07 RPM
SRP007412_cerebellum	0.00 RPM	68.36 RPM
SRP007412_heart	0.00 RPM	13.45 RPM
SRP007412_kidney	0.00 RPM	83.29 RPM
SRP007412_liver	0.00 RPM	35.11 RPM
SRP007412_testis	0.00 RPM	59.78 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2641 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2641 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000006072	1 retrocopy	retro_etel_873,
Homo sapiens	ENSG00000123091	1 retrocopy	retro_hsap_3925,
Gorilla gorilla	ENSGGOG00000004919	1 retrocopy	retro_ggor_2641 ,
Myotis lucifugus	ENSMLUG00000004439	1 retrocopy	retro_mluc_145,
Otolemur garnettii	ENSOGAG00000011682	1 retrocopy	retro_ogar_2003,
Pongo abelii	ENSPPYG00000001361	1 retrocopy	retro_pabe_3241,
Pan troglodytes	ENSPTRG00000041089	1 retrocopy	retro_ptro_2669,
Ictidomys tridecemlineatus	ENSSTOG00000020072	4 retrocopies	retro_itri_1747, retro_itri_1886, retro_itri_633, retro_itri_974,
Tursiops truncatus	ENSTTRG00000010211	1 retrocopy	retro_ttru_1644,