RetrogeneDB ID: retro_ggor_278

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 1:113179826..113180000(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COA5
• Ensembl ID: ENSGGOG00000006019
• Aliases: None
• Description: None

Sequence

>retro_ggor_278
CTGAAGGAGGACCTGGGCGTGTGTCTGTTGCAGTCCAACTGTGTGGTCCAGGAAGGAAAATCCCCTCTGCAGTGTTTGAA
GAAAGGATACTGCAAAGCTTTGAAATACTCATTTTTTGAGTATAAAAGATCAGTGTTGGATACCAGGTCAAGAATCAGAG
GAAGAAAGGGATAT

Alignment

ORF - retro_ggor_278 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.03 %
• Parental protein coverage: 78.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LKEDLGACLLQSDCVVQEGKSPRQCLKEGYCNSLKYAFFECKRSVLDNRARFRGRKGY
          LKEDLG.CLLQS.CVVQEGKSP.QCLK.GYC..LKY.FFE.KRSVLD.R.R.RGRKGY
Retrocopy LKEDLGVCLLQSNCVVQEGKSPLQCLKKGYCKALKYSFFEYKRSVLDTRSRIRGRKGY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	31.94 RPM
SRP007412_cerebellum	0.00 RPM	32.90 RPM
SRP007412_heart	0.00 RPM	8.41 RPM
SRP007412_kidney	0.00 RPM	32.18 RPM
SRP007412_liver	0.00 RPM	25.64 RPM
SRP007412_testis	0.10 RPM	35.12 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_278 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_278 has 3 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_204
Pan troglodytes	retro_ptro_340
Pongo abelii	retro_pabe_435

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007139	1 retrocopy	retro_cjac_1382,
Cavia porcellus	ENSCPOG00000009263	1 retrocopy	retro_cpor_270,
Equus caballus	ENSECAG00000004183	1 retrocopy	retro_ecab_295,
Echinops telfairi	ENSETEG00000013626	1 retrocopy	retro_etel_757,
Felis catus	ENSFCAG00000004424	1 retrocopy	retro_fcat_201,
Homo sapiens	ENSG00000183513	1 retrocopy	retro_hsap_204,
Gorilla gorilla	ENSGGOG00000006019	1 retrocopy	retro_ggor_278 ,
Myotis lucifugus	ENSMLUG00000013167	2 retrocopies	retro_mluc_1336, retro_mluc_1760,
Monodelphis domestica	ENSMODG00000001197	1 retrocopy	retro_mdom_1413,
Nomascus leucogenys	ENSNLEG00000001998	1 retrocopy	retro_nleu_1854,
Ochotona princeps	ENSOPRG00000002972	3 retrocopies	retro_opri_1198, retro_opri_1203, retro_opri_391,
Pongo abelii	ENSPPYG00000012085	1 retrocopy	retro_pabe_435,
Pan troglodytes	ENSPTRG00000012267	1 retrocopy	retro_ptro_340,
Pteropus vampyrus	ENSPVAG00000001578	1 retrocopy	retro_pvam_460,
Sorex araneus	ENSSARG00000006275	1 retrocopy	retro_sara_61,