RetrogeneDB ID: retro_ggor_2895

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: X:34980569..34980988(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000161547
• Ensembl ID: ENSGGOG00000014378
• Aliases: None
• Description: None

Sequence

>retro_ggor_2895
ATGAGTTACAGTCGCCTTCCTCCCAATGTCGAAGGCATGACTTCCCTCAAGGTGGACAACCTGACCAACCGCACATCGGC
CAACACCCTGCGACCTGTGTTCAAGAAGTATGGGAGCATGGGCGACGTGTACATCCCCTGGGATCGCATCACTAGACAGT
CCCGCCGCTTCACCTTCATCCTCTTCCACTTCAAGCACCAGGTCGAGGATGCCATGGACGCTCTCGACGGGATCATGCTG
ATGGCCAAGAGCTTTGTGTGCAGGTGGCACGCCATGGTCATCCCCCACGTTTCTACCGTAACTTCCGCTGGGTAACGTCT
TCTAGCAGGTATGAAGGAGACAACTACAAACGCCAGAGGCTCAGCCGAAGGCGTCGTCATCCCAGCCGTTCCTGCAGCAG
GGGCCGATCTGGATCCCAG

Alignment

ORF - retro_ggor_2895 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.61 %
• Parental protein coverage: 62.5 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED
          MSY.R.PP.VEGMTSLKVDNLT.RTS..TLR.VF.KYG..GDVYIP.DR.T..SR.F.F..FH.K...ED
Retrocopy MSYSRLPPNVEGMTSLKVDNLTNRTSANTLRPVFKKYGSMGDVYIPWDRITRQSRRFTFILFHFKHQVED

Parental  AMDAMDGAVL-DGRELRVQMARYGRPPDSHHSRRGRRRTPPRDWGNGVWRRDTCSPRRRRRSRSRSRSRS
          AMDA.DG..L.DG.EL.VQ.AR.G.PP......R...........N....R.....R...RS.SR.RS.S
Retrocopy AMDALDGIML<DGQELCVQVARHGHPPRFYRNFRWVTSSSRYEGDNYKRQRLSRRRRHPSRSCSRGRSGS

Parental  R
          .
Retrocopy Q

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	14.91 RPM
SRP007412_cerebellum	0.00 RPM	15.48 RPM
SRP007412_heart	0.00 RPM	6.72 RPM
SRP007412_kidney	0.00 RPM	14.19 RPM
SRP007412_liver	0.00 RPM	18.44 RPM
SRP007412_testis	0.00 RPM	20.41 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2895 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2895 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000000392	4 retrocopies	retro_ggor_1044, retro_ggor_1411, retro_ggor_1522, retro_ggor_2870,
Gorilla gorilla	ENSGGOG00000014378	1 retrocopy	retro_ggor_2895 ,