RetrogeneDB ID: retro_ggor_507

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 10:54292920..54293205(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FXYD6
• Ensembl ID: ENSGGOG00000006473
• Aliases: None
• Description: None

Sequence

>retro_ggor_507
ATGGAGGTGGTGCTGATCTTTCTATGCAGCCTGTTGGCCCACATTGTCCTGGCCGATGCAGTTGAGAGGGAGAAGCAAAT
TGACCCTTTTCATTATGACTACCAGACCCTAAGGATTAGGGGGTGGGTATGTGCTGTGGTCCTCTTCTCCATTGGGATCC
TCCTTATCCTAGGTTGCAGATACAAGTGCAGTTTCAATCAGAAGCCCAGGACCCCAGGAGAGGAGGAAGCCCAGGTGGAG
AACCTCATCACTGCAAATGCAACAAAGCTCCAGAAAGCAGAGAGC

Alignment

ORF - retro_ggor_507 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.89 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MELVLVFLCSLLAPTVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCSFNQKPR
          ME.VL.FLCSLLA..VLA.A.E.EK..DPFHYDYQTLRI.G.V.AVVLFS.GILLIL..R.KCSFNQKPR
Retrocopy MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGWVCAVVLFSIGILLILGCRYKCSFNQKPR

Parental  APGDEEAQVENLITANATEPQKAEN
          .PG.EEAQVENLITANAT..QKAE.
Retrocopy TPGEEEAQVENLITANATKLQKAES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.10 RPM	949.63 RPM
SRP007412_cerebellum	0.04 RPM	615.36 RPM
SRP007412_heart	0.00 RPM	62.51 RPM
SRP007412_kidney	0.00 RPM	75.03 RPM
SRP007412_liver	0.00 RPM	11.24 RPM
SRP007412_testis	0.00 RPM	146.08 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_507 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_507 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013044	1 retrocopy	retro_cjac_2098,
Erinaceus europaeus	ENSEEUG00000011989	1 retrocopy	retro_eeur_382,
Homo sapiens	ENSG00000137726	2 retrocopies	retro_hsap_562, retro_hsap_662,
Gorilla gorilla	ENSGGOG00000006473	2 retrocopies	retro_ggor_507 , retro_ggor_574,
Macaca mulatta	ENSMMUG00000007617	2 retrocopies	retro_mmul_2439, retro_mmul_2440,
Nomascus leucogenys	ENSNLEG00000007348	2 retrocopies	retro_nleu_1982, retro_nleu_2890,
Otolemur garnettii	ENSOGAG00000015394	2 retrocopies	retro_ogar_2451, retro_ogar_3061,
Pongo abelii	ENSPPYG00000003918	3 retrocopies	retro_pabe_583, retro_pabe_644, retro_pabe_648,
Pan troglodytes	ENSPTRG00000004329	3 retrocopies	retro_ptro_3127, retro_ptro_421, retro_ptro_481,