RetrogeneDB ID: | retro_ggor_761 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:128859187..128859815(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000016227 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BAK1 | ||
Ensembl ID: | ENSGGOG00000022462 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MASGQGPGPPRQECGEPALPSASEEQVAQDTEE-VFRSYVFYRHQQEQEAEGAAAPADPEMV-TLPLQPS |
MASGQGPGPPRQECG.PAL.SASEEQVAQDTE..VFRSYVFY.HQQEQEAEGAAAPA.PEM..TL.LQP. | |
Retrocopy | MASGQGPGPPRQECGKPALRSASEEQVAQDTEG<VFRSYVFYHHQQEQEAEGAAAPANPEMA<TLRLQPR |
Parental | STMGQVGRQLAIIG-DDINRRYD-SEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGY |
STMGQVGRQLAI...DDINR.YD.SEFQTMLQ.LQP.AENAYEYFTKIA.SLFESGIN.GRVVALLGFGY | |
Retrocopy | STMGQVGRQLAITR<DDINRHYD>SEFQTMLQRLQPRAENAYEYFTKIASSLFESGINRGRVVALLGFGY |
Parental | RLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALNLGNGPILNVLVVLGVVLLGQFVVR |
RL.LHVYQH.LTGFLG.VTRFVV.FML.H.IARWI.QRGGWVAA..LGN.PILNVLVV.G.VLLGQFVVR | |
Retrocopy | RLVLHVYQHSLTGFLGLVTRFVV-FMLQHGIARWISQRGGWVAAPDLGNSPILNVLVVVGGVLLGQFVVR |
Parental | RFFKS |
RFFKS | |
Retrocopy | RFFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 7 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .79 RPM |
SRP007412_heart | 0 .06 RPM | 13 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .13 RPM |
SRP007412_liver | 0 .00 RPM | 9 .76 RPM |
SRP007412_testis | 0 .10 RPM | 6 .73 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_942 |
Pan troglodytes | retro_ptro_652 |
Macaca mulatta | retro_mmul_1130 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013657 | 1 retrocopy | |
Homo sapiens | ENSG00000030110 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022462 | 1 retrocopy |
retro_ggor_761 ,
|
Macaca mulatta | ENSMMUG00000009104 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008351 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001127 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018053 | 1 retrocopy |