RetrogeneDB ID: | retro_hsap_1284 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:89630605..89631039(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233211 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GRPEL2 | ||
Ensembl ID: | ENSG00000164284 | ||
Aliases: | GRPEL2, Mt-GrpE#2 | ||
Description: | GrpE-like 2, mitochondrial (E. coli) [Source:HGNC Symbol;Acc:21060] |
Percent Identity: | 76.67 % |
Parental protein coverage: | 66.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAVRSLWAGRLRVQRLLAWSAAWESKGWPLPFSTATQRTAGEDCRSEDPPDELGPPLAERALRVKAVKLE |
.AV..LW......Q.LLA.SA.WE.KGW.L.FSTA.QRT.GEDC.SEDPPDELG..LAE.ALRVKAVKLE | |
Retrocopy | LAVQLLW----QMQPLLASSAEWEGKGWLLLFSTAMQRTTGEDCSSEDPPDELGCSLAEWALRVKAVKLE |
Parental | KEVQDLTVRYQRAIADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVA-DILEKTTECISEESEPEDQKLT |
KEVQDLT.RYQRA.ADCENIRR.TQRCVE..KIF.IQSFCK.LVEV...ILEKTTECISEES.P.DQKLT | |
Retrocopy | KEVQDLTMRYQRAVADCENIRRGTQRCVENSKIFRIQSFCKILVEVS<HILEKTTECISEESDPVDQKLT |
Parental | LEKVFRGLLL |
LEKVF.GL.L | |
Retrocopy | LEKVFQGLSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 26 .93 RPM |
bodymap2_adrenal | 0 .00 RPM | 28 .90 RPM |
bodymap2_brain | 0 .00 RPM | 28 .93 RPM |
bodymap2_breast | 0 .00 RPM | 27 .61 RPM |
bodymap2_colon | 0 .00 RPM | 15 .02 RPM |
bodymap2_heart | 0 .00 RPM | 13 .62 RPM |
bodymap2_kidney | 0 .00 RPM | 17 .99 RPM |
bodymap2_liver | 0 .00 RPM | 10 .20 RPM |
bodymap2_lung | 0 .00 RPM | 25 .21 RPM |
bodymap2_lymph_node | 0 .00 RPM | 21 .71 RPM |
bodymap2_ovary | 0 .00 RPM | 34 .00 RPM |
bodymap2_prostate | 0 .00 RPM | 17 .87 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 11 .55 RPM |
bodymap2_testis | 0 .00 RPM | 28 .56 RPM |
bodymap2_thyroid | 0 .00 RPM | 22 .73 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 26 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_877 |
Pongo abelii | retro_pabe_1063 |
Macaca mulatta | retro_mmul_1317 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004070 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011142 | 1 retrocopy | |
Felis catus | ENSFCAG00000003624 | 1 retrocopy | |
Homo sapiens | ENSG00000109519 | 3 retrocopies | |
Homo sapiens | ENSG00000164284 | 2 retrocopies |
retro_hsap_1284 , retro_hsap_4842,
|
Gorilla gorilla | ENSGGOG00000005410 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021662 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010160 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016138 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014326 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017396 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005467 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |