RetrogeneDB ID: | retro_hsap_1348 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:60646181..60646732(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000258563 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSG00000100567 | ||
Aliases: | PSMA3, HC8, PSC3 | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 76.47 % |
Parental protein coverage: | 72.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLG |
.DR.VGM..AGL.ADA.SLADIAREE.SNF.S.FGYN.PLKHLA.RV.MYVHAYTLYSAVR.F..SFMLG | |
Retrocopy | LDRNVGMLAAGL*ADACSLADIAREEVSNFKSDFGYNTPLKHLANRVDMYVHAYTLYSAVRSFAFSFMLG |
Parental | SYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQA-AKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDK |
SYS.ND.AQ..MID.SGV.YGYW.CA.GKARQA..KTEIEKLQMKEMTC.D.V.EVA..IYIVHD..KDK | |
Retrocopy | SYSMNDSAQFSMIDSSGVLYGYWACATGKARQA<CKTEIEKLQMKEMTCYDTVTEVAQVIYIVHDDAKDK |
Parental | AFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
....ELSWV..LT.GRHEIV.KDIRE.A.KYAKESL.EED.SDDDNM | |
Retrocopy | VY--ELSWVSGLTKGRHEIVSKDIRE*ADKYAKESLSEEDRSDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 38 .32 RPM |
bodymap2_adrenal | 0 .00 RPM | 80 .57 RPM |
bodymap2_brain | 0 .09 RPM | 39 .59 RPM |
bodymap2_breast | 0 .00 RPM | 56 .19 RPM |
bodymap2_colon | 0 .00 RPM | 36 .99 RPM |
bodymap2_heart | 0 .00 RPM | 51 .32 RPM |
bodymap2_kidney | 0 .00 RPM | 82 .04 RPM |
bodymap2_liver | 0 .00 RPM | 64 .01 RPM |
bodymap2_lung | 0 .00 RPM | 61 .66 RPM |
bodymap2_lymph_node | 0 .00 RPM | 42 .54 RPM |
bodymap2_ovary | 0 .00 RPM | 56 .91 RPM |
bodymap2_prostate | 0 .00 RPM | 54 .21 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 49 .73 RPM |
bodymap2_testis | 0 .00 RPM | 45 .08 RPM |
bodymap2_thyroid | 0 .00 RPM | 70 .65 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 43 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_923 |
Gorilla gorilla | retro_ggor_1049 |
Pongo abelii | retro_pabe_1120 |
Macaca mulatta | retro_mmul_2187 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .12 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .08 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |