RetrogeneDB ID: | retro_hsap_1820 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:30438579..30439609(-) | ||
Located in intron of: | ENSG00000263369 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000265574 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR45B | ||
Ensembl ID: | ENSG00000141580 | ||
Aliases: | WDR45B, WDR45L, WIPI-3, WIPI3 | ||
Description: | WD repeat domain 45B [Source:HGNC Symbol;Acc:25072] |
Percent Identity: | 92.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLE-GGVGHVEMLFRCNYLALV |
MNLLPCN.H.NGLLYAGF.QDH.CFACGMENGFRVYN.DPL.EKEKQEFL..GGVGHVEMLFRCNYLAL. | |
Retrocopy | MNLLPCNHHRNGLLYAGFDQDHRCFACGMENGFRVYNADPLNEKEKQEFLK<GGVGHVEMLFRCNYLALI |
Parental | GGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCY |
GGGKKPKYPPNKVMIWDDLKKKTVIE.EFSTEVKAVKLRRDRIVVVLDS.IKVFTFTHNP..LH...TCY | |
Retrocopy | GGGKKPKYPPNKVMIWDDLKKKTVIETEFSTEVKAVKLRRDRIVVVLDSVIKVFTFTHNPQWLHILKTCY |
Parental | NPKGLCVLCPNSNNSLLAFPGT-HTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGT |
NPKGLCVLCPNSNNSLLAF.GT.HTGHVQLVDLASTEKPPVDIPAHEGVLSC.AL.LQGTRIATASEKGT | |
Retrocopy | NPKGLCVLCPNSNNSLLAFLGT<HTGHVQLVDLASTEKPPVDIPAHEGVLSCSALKLQGTRIATASEKGT |
Parental | LIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPK |
LI.IFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAED.KRNKQSSLASASFLPK | |
Retrocopy | LIGIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDLKRNKQSSLASASFLPK |
Parental | YFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNPKGECIRDVYAQFLEMTDDKL |
YFS.KWSFSKFQVPSGSPCICAFGT.PNAVIAICAD.SYYK.LFNPKGECIRDVYAQFLEMTDDKL | |
Retrocopy | YFSYKWSFSKFQVPSGSPCICAFGTQPNAVIAICADCSYYKLLFNPKGECIRDVYAQFLEMTDDKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 64 .72 RPM |
bodymap2_adrenal | 0 .00 RPM | 82 .98 RPM |
bodymap2_brain | 0 .07 RPM | 93 .81 RPM |
bodymap2_breast | 0 .00 RPM | 61 .48 RPM |
bodymap2_colon | 0 .02 RPM | 47 .86 RPM |
bodymap2_heart | 0 .00 RPM | 37 .83 RPM |
bodymap2_kidney | 0 .06 RPM | 64 .79 RPM |
bodymap2_liver | 0 .06 RPM | 38 .42 RPM |
bodymap2_lung | 0 .00 RPM | 71 .10 RPM |
bodymap2_lymph_node | 0 .16 RPM | 58 .60 RPM |
bodymap2_ovary | 0 .00 RPM | 85 .20 RPM |
bodymap2_prostate | 0 .00 RPM | 74 .82 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 20 .22 RPM |
bodymap2_testis | 0 .04 RPM | 135 .12 RPM |
bodymap2_thyroid | 0 .00 RPM | 71 .86 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 44 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1171 |
Gorilla gorilla | retro_ggor_2173 |
Pongo abelii | retro_pabe_150 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005657 | 1 retrocopy | |
Homo sapiens | ENSG00000141580 | 2 retrocopies |
retro_hsap_1820 , retro_hsap_1879,
|
Gorilla gorilla | ENSGGOG00000006132 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000013344 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021803 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025173 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010516 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008785 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009807 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000006212 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .12 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .08 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .17 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .12 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .13 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .08 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .14 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .09 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .12 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .08 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |