RetrogeneDB ID: | retro_hsap_2335 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:158067372..158067999(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213194 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK7 | ||
Ensembl ID: | ENSG00000134058 | ||
Aliases: | CDK7, CAK1, CDKN7, HCAK, MO15, STK1, p39MO15 | ||
Description: | cyclin-dependent kinase 7 [Source:HGNC Symbol;Acc:1778] |
Percent Identity: | 91.87 % |
Parental protein coverage: | 60.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI |
.G...FATVYKARDKNTNQIV.IKKIKLGHRSEAK.GINRTALREI.LLQELSHPNIIGLLDAFG.KSNI | |
Retrocopy | VGGFKFATVYKARDKNTNQIVTIKKIKLGHRSEAKNGINRTALREIQLLQELSHPNIIGLLDAFGCKSNI |
Parental | SLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFG |
SLVF.FMETDLEVIIKDNSLVLTPSHIKA.MLMTLQGLEYLHQHWILHRDLKP.NLLLDENGVLKLADFG | |
Retrocopy | SLVFGFMETDLEVIIKDNSLVLTPSHIKACMLMTLQGLEYLHQHWILHRDLKPSNLLLDENGVLKLADFG |
Parental | LAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIF |
LAKSFGSP.RAYT.QV.TRWY.APELLFGARMYGVGVDMWAVGCILAELLLRVPFL.GDS.LDQLTRIF | |
Retrocopy | LAKSFGSPSRAYTYQVATRWYQAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLSGDSELDQLTRIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 12 .34 RPM |
bodymap2_adrenal | 0 .00 RPM | 17 .11 RPM |
bodymap2_brain | 0 .05 RPM | 11 .79 RPM |
bodymap2_breast | 0 .02 RPM | 13 .89 RPM |
bodymap2_colon | 0 .02 RPM | 11 .56 RPM |
bodymap2_heart | 0 .00 RPM | 6 .09 RPM |
bodymap2_kidney | 0 .12 RPM | 20 .45 RPM |
bodymap2_liver | 0 .00 RPM | 6 .27 RPM |
bodymap2_lung | 0 .00 RPM | 11 .32 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .29 RPM |
bodymap2_ovary | 0 .02 RPM | 13 .73 RPM |
bodymap2_prostate | 0 .00 RPM | 15 .92 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 12 .17 RPM |
bodymap2_testis | 0 .02 RPM | 48 .81 RPM |
bodymap2_thyroid | 0 .02 RPM | 25 .86 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 14 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1707 |
Gorilla gorilla | retro_ggor_1772 |
Pongo abelii | retro_pabe_2114 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000134058 | 1 retrocopy |
retro_hsap_2335 ,
|
Gorilla gorilla | ENSGGOG00000013349 | 1 retrocopy | |
Mus musculus | ENSMUSG00000069089 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010748 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002566 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015525 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016946 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012193 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |