RetrogeneDB ID: | retro_hsap_3538 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:154870638..154871373(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000220181 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C6orf203 | ||
Ensembl ID: | ENSG00000130349 | ||
Aliases: | C6orf203, PRED31 | ||
Description: | chromosome 6 open reading frame 203 [Source:HGNC Symbol;Acc:17971] |
Percent Identity: | 79.35 % |
Parental protein coverage: | 99.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IISAMAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFYNIFSLR |
.ISAMAM.SVKL.AGVLRKPD.WIGL.GVL.GTPSS.KLCTSWN.YLYFSSTKL.APNY.TLFYNIFSLR | |
Retrocopy | VISAMAMTSVKLHAGVLRKPDTWIGLSGVL*GTPSSHKLCTSWNQYLYFSSTKLHAPNYNTLFYNIFSLR |
Parental | LPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKV-DEEDSDEESHHDEMSEQEEELEDDPTVV-KNYKD |
LPGLL.S.E..FPFS.RLKSNI.STKSTKK.LQK..DEEDSD.ES...EMSEQEEELED..T...K.Y.D | |
Retrocopy | LPGLLISLEYFFPFSIRLKSNISSTKSTKKYLQKIGDEEDSDAESDQNEMSEQEEELEDGLTIA<KDYQD |
Parental | LEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTETVM |
LE..V.SF..DVVLKT.LDIGRNKVEDAF.KGE.RLN.EKLWKKSR.VKVGDTLDLLIGEDKEAGTETVM | |
Retrocopy | LETVVRSFQDDVVLKTSLDIGRNKVEDAFCKGEFRLNGEKLWKKSRMVKVGDTLDLLIGEDKEAGTETVM |
Parental | RIL-LKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK |
.IL....VFEEK.ESEKY.VVL..WK.LK.PKKRMSK | |
Retrocopy | QIL>XXXVFEEKAESEKYTVVLQQWKNLKMPKKRMSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 7 .43 RPM |
bodymap2_adrenal | 0 .00 RPM | 13 .94 RPM |
bodymap2_brain | 0 .00 RPM | 11 .63 RPM |
bodymap2_breast | 0 .00 RPM | 15 .41 RPM |
bodymap2_colon | 0 .00 RPM | 13 .77 RPM |
bodymap2_heart | 0 .00 RPM | 14 .77 RPM |
bodymap2_kidney | 0 .00 RPM | 24 .88 RPM |
bodymap2_liver | 0 .00 RPM | 10 .60 RPM |
bodymap2_lung | 0 .00 RPM | 2 .50 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .95 RPM |
bodymap2_ovary | 0 .00 RPM | 17 .75 RPM |
bodymap2_prostate | 0 .00 RPM | 12 .44 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .80 RPM |
bodymap2_testis | 0 .00 RPM | 17 .63 RPM |
bodymap2_thyroid | 0 .00 RPM | 17 .87 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 8 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2405 |
Gorilla gorilla | retro_ggor_2389 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003732 | 1 retrocopy | |
Homo sapiens | ENSG00000130349 | 1 retrocopy |
retro_hsap_3538 ,
|
Gorilla gorilla | ENSGGOG00000006113 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013534 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004137 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007391 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013450 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008839 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016885 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018464 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000008837 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |