RetrogeneDB ID:

retro_meug_2181

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold98800:9474..10178(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C6orf203
Ensembl ID:ENSMEUG00000013534
Aliases:None
Description:chromosome 6 open reading frame 203 [Source:HGNC Symbol;Acc:17971]


Retrocopy-Parental alignment summary:






>retro_meug_2181
ATGACTAGTCTCAGGTTGCCCCTCTGTACTTTAAGAAAACCACATGCCTGGATTGGACTCTGGAGGACATCTCTTACACA
TAAAACCCTGTACCTCTTGGAGTCACTATGTAAATTCTTCTGGTTATCAGTTAAATCCATCAAATAATAGAACATTGTTC
TTCTGTAGCATTTCTTCCATGAAACTCCCAGGGCTTTTAATATCCCCAGAATGCATTTCACTCTTTTCCATAAGACTCAA
AAGCAACACAGGATCAAAAAACACCAGTAAAAAGGCTTTGCAGAAAGTAGATGATGATGACAATGACTGATGAAGATTGG
AGAGAGACGAGCAAGCAGGAAGATGAATTTGAAGATGACCCCAATGTAGTGAAAGACTATAAGGATCTGGAGAAAGTTGT
CCCCTCTTTTTGGTATGATGTCATCTTGAAAACAGATCTGGATCTTACAAGAAATAAAATAGAAAATGTATTCTATAAAG
GTGAACTCAGACTGAATGGAGAAAAGTTATGGAAGAAAAGCAGAATGATGAAAGTGAGTGATGCACTGGATCTTATCATT
GGAGAAGATAAAGAATCAGGAACAGAGACAGCTATGCGAATTGTCCTAAAAAAAGTGTCAGAAGAGAAAACTGAGTCTGA
AAAATACTGAGTGTTTTTATGCTGGTGGAAAAAAATTATACTGCCCAAGAAGAGCATTTCTAAG

ORF - retro_meug_2181 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.9 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalITSLRLPLHVLRKPNAWIGLWGTSLAHK-PCTSWSHYINSSSYQLNPSNYRTLFFYSISSVKLPGLLISP
.TSLRLPL..LRKP.AWIGLW.TSL.HK.PCTSWSHY.NSS.YQLNPSN.RTLFF.SISS.KLPGLLISP
RetrocopyMTSLRLPLCTLRKPHAWIGLWRTSLTHK>PCTSWSHYVNSSGYQLNPSNNRTLFFCSISSMKLPGLLISP
ParentalECISLFSIRLKSNTGSKKTSKKALRKVDDDDD-SDEDRGEMSEQEDEFEDYSNVVKDYKDLEKVVPSFRY
ECISLFSIRLKSNTGSK.TSKKAL.KVDDDD...DED..E.S.QEDEFED..NVVKDYKDLEKVVPSF.Y
RetrocopyECISLFSIRLKSNTGSKNTSKKALQKVDDDDN>TDEDWRETSKQEDEFEDDPNVVKDYKDLEKVVPSFWY
ParentalDVILKTGLDLARNKIEDAFYKGELRLNGEKLWKKSRTVKVGDTLDLIIGEDKESETETAMRIVLKKVSEE
DVILKT.LDL.RNKIE..FYKGELRLNGEKLWKKSR..KV.D.LDLIIGEDKES.TETAMRIVLKKVSEE
RetrocopyDVILKTDLDLTRNKIENVFYKGELRLNGEKLWKKSRMMKVSDALDLIIGEDKESGTETAMRIVLKKVSEE
ParentalKTESEKYRVLLRRWKKIRLPKKSISK
KTESEKY.V.L..WKKI.LPKKSISK
RetrocopyKTESEKY*VFLCWWKKIILPKKSISK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2181 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2181 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000037321 retrocopy
Homo sapiens ENSG000001303491 retrocopy
Gorilla gorilla ENSGGOG000000061131 retrocopy
Macropus eugenii ENSMEUG00000013534 1 retrocopy
retro_meug_2181 ,
Microcebus murinus ENSMICG000000041371 retrocopy
Macaca mulatta ENSMMUG000000073911 retrocopy
Nomascus leucogenys ENSNLEG000000134502 retrocopies
Otolemur garnettii ENSOGAG000000088392 retrocopies
Pongo abelii ENSPPYG000000168851 retrocopy
Pan troglodytes ENSPTRG000000184642 retrocopies
Tursiops truncatus ENSTTRG000000088372 retrocopies



Copyright © RetrogeneDB 2014-2017