RetrogeneDB ID: | retro_itri_1135 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393383.1:5197886..5198508(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000013201 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNPDA1 | ||
Ensembl ID: | ENSSTOG00000016508 | ||
Aliases: | None | ||
Description: | glucosamine-6-phosphate deaminase 1 [Source:HGNC Symbol;Acc:4417] |
Percent Identity: | 90.38 % |
Parental protein coverage: | 71.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ESYHSFMWNNFFKHIDIHPENT-HILDGNAADLQAECDAFEQKIKAAGGIELFVGGIGPDGHIAFNEPGS |
.SYHSFMWNNFFKHIDIHPENT.HIL.GN.ADLQAECDAFEQKIK.AGGIELF.GGIGPDGHIAFNEPGS | |
Retrocopy | QSYHSFMWNNFFKHIDIHPENT>HILHGNSADLQAECDAFEQKIKDAGGIELFAGGIGPDGHIAFNEPGS |
Parental | SLVSRTRVKTLAMDTILANARFFDGDLAKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVN |
SLVSR..VKT..MDT.LANARFFDGDLAKVPTMALTVGVGTVMDAREVMILITGAHK.FA..KAIEEGV. | |
Retrocopy | SLVSRICVKTVSMDTMLANARFFDGDLAKVPTMALTVGVGTVMDAREVMILITGAHKTFASNKAIEEGVK |
Parental | HMWTVSAFQQHPCTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKEIEKSQSSKKPYSD |
.MWTVSAFQQHPCTVFVCDEDATLE.KVK.VKYFKGLMLVHNKLVDPLYSIKEKEIEK.QSSKKP.SD | |
Retrocopy | RMWTVSAFQQHPCTVFVCDEDATLEPKVKIVKYFKGLMLVHNKLVDPLYSIKEKEIEKNQSSKKPCSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007865 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009884 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007804 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000015442 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010398 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052102 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007303 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016508 | 1 retrocopy |
retro_itri_1135 ,
|
Tupaia belangeri | ENSTBEG00000003330 | 2 retrocopies |