>retro_itri_1293
GTCCCCTGCCTCTGCAGTGGTGCACCATGCTTGCTGTGTAGTTGCTTTTCCAACATTAAGAAGTCCACTGGGACTTGGCT
CATCTATGCTTTTATTCTCCTCCTGAGAACTGCTGTGCTGACAGAAGGGACAGAAACTCAGATGACGAAGATTCCTGGAT
TCTGTGAAGGGTGATTTAAAATCAAGGTGGCTGATATAAAGGCAGATAAAGATTGGGATGTGCTGGTTTGTTATAAATCT
ATGTGTCAGATCAACTTTATCTTAGCCATTTTTGAGGGGGAGTTTCTTCTTTTTGCTCATGTTAAAAAATAAAAGCAAGT
AAAGCTCCCAGAGCAACAGTACATACTGGGTTTTTTTTTTATTCAAAATCGCTGCCATTGTTGGTATCACGATTGGATCT
TTCTACATCCCTGGGGGTACTTCACCTTGGCCTGGTTTGCTGTTGGTAAGGTGAGAGCTGCTTTGCTCATCCTCATCCAG
CTGGTACTCTTGGTAGACCTAGATAACCCTTGGAATGAATTATGGGTGAGTCGTATGGAAGAAAGAAACCCAAAGGTCTG
ATATGCCACTTTACTCTCTGATACAACCTTGTTTTATGTCCTGCCAATCGTCATTGTTGGGTTATTCCACACATACTACA
CTAAACCAGATGGCTGCACAGAAAACAAATTCTTCATCAATATTAATCTGATTCTCTGTGTTGTTTCCATTATATCCATC
CACCCCAAAATTCAGGAACATCAGCCTCGTTCAGGTCTCCTACAGTCCTCTGTCATCATGCTCTACACCTGTACCTCCCT
GGTCAGCCACGACAAATGAACTTGGTGGTTCCTGCAACCCTACTAAGAATCATTACACACATAAGTTCACTAACCATGGC
TCCTGCAAACTCCACTGCTGTAGTTCCTTTCTCTGCTCTGCCATCAAAGAAGAGGCACTTTCTGGATGTAGAAAATCTTC
TAGGGCTTACAGTCTTGGTTTCCTGTCTTTTGTATTCTAGCATTCGCTCTTCCAGCAACAGCCAAGTGAATAAGCTGACC
CCGCTCAGGGAGTGACAGCGTGATCCTTGATGATACAGCTGTCAGTGGAGCCAGCGATGAACAAGATGGACAGCCTTGGT
GGACTGTGAACAAGGAGAGAGAGGGAGTGCAGTACAGCTACTTGTTTTTCCATTTGATGCTCTGTTTGGCTTCCTTGTAC
GTCATGATGACACTGAATAGCTGGTATAGCTCTGATGCCAAATTCCAGAGTGTATCCAGCAAGTGGCCTGCTGTGTGGGT
CAAGATCAGCTCCAGCTGGGTGTGCCTCCT
ORF - retro_itri_1293 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.44 % |
Parental protein coverage: |
97.14 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | VPCLCSGASCLLCSCCPNTKNSTVTRLIYAFILLLGTAVSCIMLTEGMETQLKKIPGFCEGGFKISVADI |
| VPCLCSGA.CLLCSC..N.K.ST.T.LIYAFILLL.TAV....LTEG.ETQ..KIPGFCEG.FKI.VADI |
Retrocopy | VPCLCSGAPCLLCSCFSNIKKSTGTWLIYAFILLLRTAV----LTEGTETQMTKIPGFCEG*FKIKVADI |
|
Parental | KADKDCDVLVGFKAVYRINFALAIFFFAFFLL-MLKVKTSKDPRAAVHNGFWF---FKIAAIVGIMVGSF |
| KADKD.DVLV..K....INF.LAI.F...FLL..L..K.............W....FKIAAIVGI..GSF |
Retrocopy | KADKDWDVLVCYKSMCQINFILAI-FEGEFLL>LLMLKNKSK*SSQSNSTYWXXXXFKIAAIVGITIGSF |
|
Parental | YIPGGS-FTSVWFVFGMVGAAFFILIQLVLLVDFAHSWNESWVSRMEEGNPRVWYAALLSVTTFFYVMSI |
| YIPGG..FT..WF..G.V.AA..ILIQLVLLVD....WNE.WVSRMEE.NP.V.YA.LLS.TT.FYV..I |
Retrocopy | YIPGGT<FTLAWFAVGKVRAALLILIQLVLLVDLDNPWNELWVSRMEERNPKV*YATLLSDTTLFYVLPI |
|
Parental | IVVGLFYTYYTKPDGCTENKFFISINLILCIVVSIIS-IHPKIQEHQPRSGLLQSSVITLYTLYLTWSAM |
| ..VGLF.TYYTKPDGCTENKFFI..N..L...V..I..IHP..Q............V.....L.L..... |
Retrocopy | VIVGLFHTYYTKPDGCTENKFFI--NINLILCVVSII<IHPP-QNSGTSASFRSPTVLCHHALHLYLPGQ |
|
Parental | TNEPDRSCNPTLLSIITHIASPTMTPANSTVVVPTSAPPSKKAHFLDAENLLGLAVFVFCLLYSSIRTSS |
| ..........TLL.IITHI.S.TM.PANST.VVP.SA.PSKK.HFLD.ENLLGL.V.V.CLLYSSIR.SS |
Retrocopy | PRQMNLVVPATLLRIITHISSLTMAPANSTAVVPFSALPSKKRHFLDVENLLGLTVLVSCLLYSSIRSSS |
|
Parental | NSQVNKLT-LSGSDSVILGDTNASGANDEEDGQPRRAVDNEKEGVQYSYSFFHLMLCLASLYIMMTLTSW |
| NSQVNKLT..SGSDSVIL.DT..SGA.DE.DGQP...V..E.EGVQYSY.FFHLMLCLASLY.MMTL.SW |
Retrocopy | NSQVNKLT>RSGSDSVILDDTAVSGASDEQDGQPWWTVNKEREGVQYSYLFFHLMLCLASLYVMMTLNSW |
|
Parental | YSPDAKFQNVTSKW-CC-VGQDHLQLGVPP |
| YS.DAKFQ.V.SKW..C.VGQD.LQLGVPP |
Retrocopy | YSSDAKFQSVSSKW<ACCVGQDQLQLGVPP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1293 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1293 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.