>retro_itri_1392
CTGCTGGGTGGCTTCTTTGTACTCATGGGTTGGCCAAGCTCTCGCAGATCTCTGCTCTTGTGTCACAGCAGAGGAAAGCC
CTGTTGCTGCAGTTTGCTAAGGTGTTCGCATTGAAGTTGTTCGGCTACCAGTCAGATCCTGTGAGCTACCCAACAGCTGT
GGGCTGGCTGGAGCTGCTGGCTGGGTGGCTGTTGGTTGTGGGCCCACCAGTTCTACAAGATATCAGTAACTTGCTCTTGA
CCCTCCCCACGATGGTGGCTGTCTTCACTATGGCATCTCTGAAAGAGTCACTGAGGTCTCCATCCCAGCCATCATCTGCT
TGGGGCTCCTGCTGTTGCTGGACATCTGCCAGTTCTTAGCCCAAGCCAAGAATGTGGTCATACACTCTAGGAAGAAGACT
CCGAGTGCATTCAAGGAACCCTGG
ORF - retro_itri_1392 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.86 % |
Parental protein coverage: |
92.81 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | LLGGFFALTG-AAKLSQISAPVSQQMKALFVQFAEVFPLKLFGYQPDPVNYQTAVGWLELLAGLLLVVGP |
| LLGGFF.L.G..AKLSQISA.VSQQ.KAL..QFA.VF.LKLFGYQ.DPV.Y.TAVGWLELLAG.LLVVGP |
Retrocopy | LLGGFFVLMG<LAKLSQISALVSQQRKALLLQFAKVFALKLFGYQSDPVSYPTAVGWLELLAGWLLVVGP |
|
Parental | PVLQDISNFLLTLLMMVAIFTLVSLKESL-STSIPAIVCLGLLLLLDVCQFLAQTKKMVRHSRKKTPSAF |
| PVLQDISN.LLTL..MVA.FT..SLKESL...SIPAI.CLGLLLLLD.CQFLAQ.K..V.HSRKKTPSAF |
Retrocopy | PVLQDISNLLLTLPTMVAVFTMASLKESL<EVSIPAIICLGLLLLLDICQFLAQAKNVVIHSRKKTPSAF |
|
Parental | KEPW |
| KEPW |
Retrocopy | KEPW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1392 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1392 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.