>retro_itri_1426
CTGCATCAGCACAACCTCTGCTCCATGACAGGCTTCTATCCAGGGGACATAAAGACCAGGTGGTTCTGGAATGGACAGGA
GGAGAGAGCTGGCATTATGTCCACTGGTCTTATTAGGAATGGAGACTGGACCTTTCAGACCATAGTGATGCTGGAAGCGA
CTCCTTCATCTGGAGATGTTTACAGCTGTCTTGTTGAGCACCCCAGTCTGTTGAGCCCTGTTTCTGTGGAGTGGAGAGAT
CAGTATGAATATTCTTGGAAAAAGATACCAAATGGAGTTGGAGCCTTCCTGCTTGGGCTAATTGTCCTTATGGTGGGGAT
TGTCATCCACCTCAGGGCTAGGAAAGGATCTGTGGAGACTCAGTCTGGTGATGAGGTCTCAAGAGCTATTCCACAGCAGC
CATACTCA
ORF - retro_itri_1426 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.61 % |
Parental protein coverage: |
50.74 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LHQHNLLLCSVTGFYPGDIKIRWFWNGQEERAGVLSTGLIRNGDWTFQTMVMLEVTPSPGDVYSCLVEHP |
| LHQHNL..CS.TGFYPGDIK.RWFWNGQEERAG..STGLIRNGDWTFQT.VMLE.TPS.GDVYSCLVEHP |
Retrocopy | LHQHNL--CSMTGFYPGDIKTRWFWNGQEERAGIMSTGLIRNGDWTFQTIVMLEATPSSGDVYSCLVEHP |
|
Parental | SLPGPVSVEWRAQREYSWKKILSGVGAFLLGLTFLLVGIIIHLRARKGSVETQSGDKISRAILQKPNS |
| SL..PVSVEWR.Q.EYSWKKI..GVGAFLLGL..L.VGI.IHLRARKGSVETQSGD..SRAI.Q.P.S |
Retrocopy | SLLSPVSVEWRDQYEYSWKKIPNGVGAFLLGLIVLMVGIVIHLRARKGSVETQSGDEVSRAIPQQPYS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1426 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1426 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.