>retro_itri_1559
TATGGGACCTCTTCACATGGATATTTTAAGAAGCTGGGAATTCCAGGGCCAACACCTCTGCCTTTTGGGGGGACTCTTCT
TAATTGTCGCCAGGGTTTGTTTAATTTTGATACAGAATGTTATAAAAAGTATGGAAAAACATGGGGCCTGTTTGATGGTT
CACAACCTGTTTTGTCTATTATGGAGCCAACAGTTCTCATCAAAGAATGTTATTCTGTCTTCACCAACCTGCGGGATGTT
GGTCCAATGGGATTTATGAAAAAATCCATCTCCTTGTCTGAGGATGAAGAGTGGAAGAGAATAAGAACACTGCTGTCTCC
AACCTTCACCACTGGAAAACTCAAGGAGATGTTCCCCATCATTAACCAGTATGGAGAAATGTTGGTGAAAAGCATGAGAC
TGAGACGGGAATCAGAGAAGGGCAAGTTTATCAACTTGAAAGACATCTTTGGGGCCTACAGCATTGATGTGATCACTGTG
ACATCATTTGGAGTGAACATTGATTCCCTCAAAAACCCACAAGATCCCTTTGTGGAGAAAGTCAAGAAGCTCTTAAGATT
TGATTTCTTTGACCTTTGCTCCTCTCAATAACTATCTTTCCATTCCTTACTCCAATTTATGAGGCAATGAATATCTCTAT
GTTTCCAAAGGATGTCACATTTTTTTTAAGAAAGCTATAAACAGAATGAAGGAAAGTCACCTTCAGGAGAAACAACAGCA
TCGGGTGTTGTTTATCAGCTTATGATAAATTCTCAGAATTCTAAAGATGTGGAATCTCATAAAGCCCAGTCTGATCTGGA
GCTTGTGGCCCAATCAATTATCTTCATTTTTTGCTGGCTGTGAGACCACTAGCAGTGCTCTTTCCTTCATTTTGTATGAA
CTGCCACCCATCCTGATGTCCAGACCAAACTGCAGCAGGAGATTGATGCGGCTTTGCCCAATGAGGCACCTGCTACCTAT
GATACCCTGATGCAGATGAAGTACCTGGACATAGTGGTGAATGAAACTCTCAGGTTGTATCCAGTTGGTGCCAGAATTGA
GAGAATCTTTAAGAAAGATATTGAAATCCATGGAGTATTCATTAGTAAGGGGACGCTGGTGGTGATACCAATCTTTGTTC
TACATCAAGACCCAAAGTATTGGCCAGAGCCTGAGGAGTTCCACCCTGAAAGGTTCAATAAGAACAAGAAAGCATTGATC
CTTATGTGTACATGCCCTTTGGAAATGGCCCCTGAAACTGCATTGGCATGAAGTTTGCTCTCATGAACATGAAACTTGCT
CTTGTCAATACAGAACTTCTCCTTCCAAATTTGTAAGGAAACGCAGATTCCTCTGAAATTAAGCAATCAAGGACTTCTTC
AACCTGAAAAGCCTATTATTCTGAAGGTTTTGTGCAGAGATGGGACAATTAGTGGAGCC
ORF - retro_itri_1559 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.61 % |
Parental protein coverage: |
95.25 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | YGTYSHGYFKKLGIPGPTPVPFFGTLLNYRRGFFNFDVECYKKYGKTWGIYDGRRPVLVITEPSIIKTVL |
| YGT.SHGYFKKLGIPGPTP.PF.GTLLN.R.G.FNFD.ECYKKYGKTWG..DG..PVL.I.EP....TVL |
Retrocopy | YGTSSHGYFKKLGIPGPTPLPFGGTLLNCRQGLFNFDTECYKKYGKTWGLFDGSQPVLSIMEP----TVL |
|
Parental | IKECYSAFTNRRDFGPVGFMKKAISLSEDEEWKRIRTLLSPTFTSGKLKEMFPIINQYGDVLVKNMRL-- |
| IKECYS.FTN.RD.GP.GFMKK.ISLSEDEEWKRIRTLLSPTFT.GKLKEMFPIINQYG..LVK.MRL.. |
Retrocopy | IKECYSVFTNLRDVGPMGFMKKSISLSEDEEWKRIRTLLSPTFTTGKLKEMFPIINQYGEMLVKSMRLRR |
|
Parental | ESEKGKFINLKDIFGAYSMDVITATSFGVNIDSLNNPQDPFVEKVKKLLKFDFFD-PLLLSITIFPFLTP |
| ESEKGKFINLKDIFGAYS.DVIT.TSFGVNIDSL.NPQDPFVEKVKKLL.FDFFD.PLLLSITIFPFLTP |
Retrocopy | ESEKGKFINLKDIFGAYSIDVITVTSFGVNIDSLKNPQDPFVEKVKKLLRFDFFD<PLLLSITIFPFLTP |
|
Parental | IFEAMNISMFPKDVTNFL-KKAISRMKESRLQEKQQHRVDFL-QLMINSQNSKDVESHKALSDLELVAQS |
| I.EAMNISMFPKDVT....KKAI.RMKES.LQEKQQHRV.F..QLMINSQNSKDVESHKA.SDLELVAQS |
Retrocopy | IYEAMNISMFPKDVTXXX<KKAINRMKESHLQEKQQHRVLFI<QLMINSQNSKDVESHKAQSDLELVAQS |
|
Parental | IIFIF-AGYETTSSALSFILYEL-ATNPDAQTKLQQEIDAALPNKAPATYDTVLQMEYLDMVVNETLRLF |
| IIFIF.AG.ETTSSALSFILYEL.AT.PD.QTKLQQEIDAALPN.APATYDT..QM.YLD.VVNETLRL. |
Retrocopy | IIFIF>AGCETTSSALSFILYEL<ATHPDVQTKLQQEIDAALPNEAPATYDTLMQMKYLDIVVNETLRLY |
|
Parental | PIAGRIERVCKKDVEINGVPIRKGTVVMIPSYVLHRDPQHWPEPEEFHPERTRFSKKNK-DSIDPYIYMP |
| P...RIER..KKD.EI.GV.I.KGT.V.IP..VLH.DP..WPEPEEFHPER.....KNK..SIDPY.YMP |
Retrocopy | PVGARIERIFKKDIEIHGVFISKGTLVVIPIFVLHQDPKYWPEPEEFHPERFN---KNK<ESIDPYVYMP |
|
Parental | FGNGPRNCIGMRFALMNMKLALVKV-MQNFSFQLCKETQIPLKLADQGLLQPEKPIILKAVCRDGTISGA |
| FGNGP.NCIGM.FAL..M...L..V..QNFSFQ.CKETQIPLKL..QGLLQPEKPIILK..CRDGTISGA |
Retrocopy | FGNGP*NCIGMKFAL--MNMKLALV>IQNFSFQICKETQIPLKLSNQGLLQPEKPIILKVLCRDGTISGA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1559 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1559 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.