>retro_itri_185
CTGGGCGACGCCACGGAAGGGGCCAGCAGCTGGCGGGAGGTGGACCTCCTGGACCTCTGCTATGGCTCTCTGCTCAGAGC
CGGCTACCTGACCCTGTATGGAGTGGAGGCGTCCCCACGCACCTAGGAGAGCCAGGCCCAGGACAGAGCCCACTCGGCCA
ACGTCTACCACACCTTCCGCCAGCTGGACCTGATGCTCCCCAAGCTGGCGCGAGGCTCCCTGTCAGTGGGGGATAATGAC
CGTGTGTGCAGCGTCAAAGCCCACCTGTGGAAGCTGCTGTCCCCCGTCAGGCTGGCCACGCGAGCCCAGCGGAGCAGCTG
GCTGGAGAGCTACCTGCGGCACCTGGAGGAGCTGGGGGTTTCGGAGGAGATGCAGGCGCGGGCCCTGGTGCTGCAGCTGT
GGGCTACACAGGGAAACATGGGGCCTGCTGCCTTCTGGCTCCTTCTCTTCCTCCTCAAGAATCCCGAGGCCCTGGCTGCT
GTCCACGGGGAACTCGAGGGCGTCCTCTGGAGAGCAGAGCAGCCCGGCTCACAGATGACCACCCTCCCGCAGAAGGTCCT
AGACAACATGCCCGTGCTCGACAGCGTGCTGGATGAGACCCTCATGCTCACAGCTGCACCCTTCATCACCCGGGAGGTGG
TGGTGGACATGGCTATGCCCATGGCCGATGGGCGGGAATTCTCTCTGCGACATGGTGACCGCCTCCTCCTCTTCCCCTTC
CTGAGTCCCCAGAGAGACCCTGACATCTACTCGGATCCTGAGACGTTTAAATACGACCTGTTCCTGAACGCCGACGGGTC
GGAGAAGAGAGACTTCTACAAGGACGGGAAGCGGCTGAAGCACCCTAGCATGCCCTGGGGGGCGGGCCACAACCAGTGCC
TGGGCAGGGGCTACGCCGTCAGCAGCATCAAGCAGTTCCTGGTCCTGGTGCTGACGCACTGCGACCTGGAGCTGATCCGG
GCAGACGTGGAGGTCCTCGAGTTTGACCTCAGCAGGTACGGCTTCGGCCTGATGCAGCCAGAACTTGACGTGCCTGTGCG
ATTCCGCGTCCGGCCC
ORF - retro_itri_185 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.41 % |
Parental protein coverage: |
71. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LVDATEGASGWREVGLLDLCYGSLLRAGYLTLYGVEASPRTPESQAQDRAHSADVYHTFRQLDLMLPKLA |
| L.DATEGAS.WREV.LLDLCYGSLLRAGYLTLYGVEASPRT.ESQAQDRAHSA.VYHTFRQLDLMLPKLA |
Retrocopy | LGDATEGASSWREVDLLDLCYGSLLRAGYLTLYGVEASPRT*ESQAQDRAHSANVYHTFRQLDLMLPKLA |
|
Parental | RGSLSVGEHPGVPGVKARGQAWACVAKARACAGSPLQPRWSLSYSVHIRSLVVEAKMFTEVFSLGTWVCG |
| RGSLSVG....V..VKA....W......R..........W..SY..H...L.V...M......L..W... |
Retrocopy | RGSLSVGDNDRVCSVKAH--LWKLLSPVRLATRAQ-RSSWLESYLRHLEELGVSEEMQARALVLQLWATQ |
|
Parental | GNMGPAAFWLLLFLLKNPEALAAVRGELERVLWGAEQPGSQMTTLPQKVLDNMPVLDSVLDETLRLTAAP |
| GNMGPAAFWLLLFLLKNPEALAAV.GELE.VLW.AEQPGSQMTTLPQKVLDNMPVLDSVLDETL.LTAAP |
Retrocopy | GNMGPAAFWLLLFLLKNPEALAAVHGELEGVLWRAEQPGSQMTTLPQKVLDNMPVLDSVLDETLMLTAAP |
|
Parental | FITREVVVDMAMPMADGREFSLRRGDRLLLFPFLSPQRDPDIYSDPETFKYDRFLNADGSEKRDFYKDGK |
| FITREVVVDMAMPMADGREFSLR.GDRLLLFPFLSPQRDPDIYSDPETFKYD.FLNADGSEKRDFYKDGK |
Retrocopy | FITREVVVDMAMPMADGREFSLRHGDRLLLFPFLSPQRDPDIYSDPETFKYDLFLNADGSEKRDFYKDGK |
|
Parental | RLKHPSVPWGMGHNQCLGRGYAVCSIKQFVVLVLTHCDLELVRADVEVPEFDLSRYGFGLLQPELDVPVR |
| RLKHPS.PWG.GHNQCLGRGYAV.SIKQF.VLVLTHCDLEL.RADVEV.EFDLSRYGFGL.QPELDVPVR |
Retrocopy | RLKHPSMPWGAGHNQCLGRGYAVSSIKQFLVLVLTHCDLELIRADVEVLEFDLSRYGFGLMQPELDVPVR |
|
Parental | FRVRP |
| FRVRP |
Retrocopy | FRVRP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_185 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_185 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.