>retro_itri_317
AAAACAGAGTTCACCCAGGGCATGATCTTGCAGACAGTGAATGGAGAGTGAGTAGACCCAACAGGGGAGCCAGCACTGAA
AACTGAGGCACACAAGACTAACTCTGCTCCTCAAACAAACCCAGGCCAAACCTGGTGGTGTCAAAATGCCCCGTTTATAA
GAGCAACCTTAGAGAGACCTTCTCCGACATCCCCAGAGGAACTCTATAGAGAGTTAACCACCCAAGGCTGGTTCAGGCCT
TTACCCATGATCCCACAATGTCAGAAGCAGACAAAGGTGAGAAGTTTCACATGGAGATGGCAGTGTCTCTGGGGAATTTT
CTGATCCAGTTCCTGAAAAACATACTGCGATGAAGGGAGGTTTAACTCTTGGCCAAAGGGGCACTTTGCTACCATCATGT
TGACCTTCATTGACAAGAGTGGAGAGACTGAGCTGTGCATGGAAGGCCGAGGCATCCTTGACCCTGAGGAGGAGAGGACA
CAGCAGGGCTGGCAGCGGTACTACACTGAAGGCATTGAACAGACCTCTGGCTATGGAGCACATTGTTTT
ORF - retro_itri_317 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.13 % |
Parental protein coverage: |
54.14 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | KTEFTQGMILPTVNGESVDPTAQPAPKTEERKTKSAPQ-KTQAKPVGVKIPTC-KITLRETFL-TSPEEL |
| KTEFTQGMIL.TVNGE.VDPT..PA.KTE..KT.SAPQ..TQAKP.GVK.P...K..LRETF..TSPEEL |
Retrocopy | KTEFTQGMILQTVNGE*VDPTGEPALKTEAHKTNSAPQ>QTQAKPGGVKMPRL>KSNLRETFS>TSPEEL |
|
Parental | YRVFTTQ-ELVQAFTHAPAMLEADKGGKFHMV-DGNVSGEFTDLVPEKHIAMKW-RFKSWPEGHFATITL |
| YR..TTQ..LVQAFTH.P.M.EADKG.KFHM..DG.VSGEF.D.VPEKH.AMK..RF.SWP.GHFATI.L |
Retrocopy | YRELTTQ<RLVQAFTHDPTMSEADKGEKFHME<DGSVSGEFSDPVPEKHTAMKG<RFNSWPKGHFATIML |
|
Parental | TFTDKSGETELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTFGYGARLF |
| TF.DKSGETELCMEGRGI..PEEERT.QGWQRYY.EGI.QT.GYGA..F |
Retrocopy | TFIDKSGETELCMEGRGILDPEEERTQQGWQRYYTEGIEQTSGYGAHCF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_317 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_317 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.