>retro_itri_516
TTTGGCTTCGGGGTTTACCCCTTCCAGGTGGCATGGTACAATGAGCTTCTGCCTCCAGCCTTCCACCTGCCCCTGCCAGG
ACCTACCCTGGCCTTCTTGGTACACAGCACACCGACCAAGTTTGACCAGGCCCTTAAGCCCTTCTTGCAGAGCCGCCACC
TCCAACCACTAACTGACCCTGTGGATCAGTGTGTGGCCTACCACCTGAGACGTGTTAGACAGAGCCTCCCAGAGCTGCAG
ATGGAAATCATTGCTGACTACAAGGTATACCCCAACTGGCGCCCTAAGATTCTGGCCCAGACAGCAGCCCATGTGGCAGG
AGCTGCTTATTACTACCAATGCCAAGATGTGGAAGCTGACCCATGGGGAACTCAGCACATAGCAGGTGTGTGCATACACC
CCCGATTTGGGGGCTTGTTTGCCATCCGAGGTGTCGTGCTGCTGCCAGGGACAGACGCCAGATCTGCCACGGAGAAAGCC
CCCTGACTGTGT
ORF - retro_itri_516 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.2 % |
Parental protein coverage: |
58.36 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FGFEVYPFQVAWYNELLPPAFHLPLPGPTLAFLVLSTPAMFDQALKPFLQSHHLQSLTDPVDQCVAYHLR |
| FGF.VYPFQVAWYNELLPPAFHLPLPGPTLAFLV.STP..FDQALKPFLQS.HLQ.LTDPVDQCVAYHLR |
Retrocopy | FGFGVYPFQVAWYNELLPPAFHLPLPGPTLAFLVHSTPTKFDQALKPFLQSRHLQPLTDPVDQCVAYHLR |
|
Parental | RVRQSLPELQMEVIADYEVYPNRRPKILAQTAAHVAGAAYYYQRQDVEADPWGTQHIAGVCIHPRFGGWF |
| RVRQSLPELQME.IADY.VYPN.RPKILAQTAAHVAGAAYYYQ.QDVEADPWGTQHIAGVCIHPRFGG.F |
Retrocopy | RVRQSLPELQMEIIADYKVYPNWRPKILAQTAAHVAGAAYYYQCQDVEADPWGTQHIAGVCIHPRFGGLF |
|
Parental | AIRGVVLLPGTETPDLPRKKPPDC |
| AIRGVVLLPGT.......K.P..C |
Retrocopy | AIRGVVLLPGTDARSATEKAP*LC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_516 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_516 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.