RetrogeneDB ID: | retro_itri_521 | ||
Retrocopy location | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
| Coordinates: | JH393298.1:11793497..11793756(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | LYPD2 | ||
| Ensembl ID: | ENSSTOG00000007179 | ||
| Aliases: | None | ||
| Description: | LY6/PLAUR domain containing 2 [Source:HGNC Symbol;Acc:25215] |
Retrocopy-Parental alignment summary:
>retro_itri_521
ATGAGGCTGTCACTGCTGGTGTTGGCTCTGGTCACCTGCAGAGAGTTCACAAAGGCCTTAAAATACTACACCTGTCAAGT
ACCCACAGGCGTGTCCAGCTGCATCACCATCATCAATTGAAATGCCAAAGAAACCAAGTGCAAGATCACCCCTCTACTCG
GGAGAGATCATGAACCCCTTGCTGGGAGACTCCATGTTGACCAAATCCTGCACCAGCAGGTATGAGCCACTAGACATATC
ATCAGCCAGATCCACCCAG
ORF - retro_itri_521 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.07 % |
| Parental protein coverage: | 67.72 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MRLALLALALATCGELAMALKCYTCLEPTGVSSCITITNCDANETMCKTT-LYSREIVYPFLGDSTVTKS |
| MRL.LL.LAL.TC.E...ALK.YTC..PTGVSSCITI.N..A.ET.CK.T.LYS.EI..P.LGDS..TKS | |
| Retrocopy | MRLSLLVLALVTCREFTKALKYYTCQVPTGVSSCITIIN*NAKETKCKIT>LYSGEIMNPLLGDSMLTKS |
| Parental | CASRCEPSDVDGIGQTR |
| C.SR.EP.D......T. | |
| Retrocopy | CTSRYEPLDISSARSTQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_521 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_521 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ictidomys tridecemlineatus | ENSSTOG00000007179 | 1 retrocopy |
retro_itri_521 ,
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