>retro_itri_893
ACACCCTTTGTCAAGGAAGAGTTGAGGTTTGCCATCCAGAACAAGCACCTCTGCCATTGGATGTCCTCTGCGCTGGAGTC
AGTCATGATCAGCGACAGACCACTGGAGATGTCAGTCACAAAAGCTGAGGTAGCTCCTGAGGATGATGAAAGGAAAAAGA
GGCAGTGGGAAAGAAATAAGATCACAGCCACCAAGTGCCAAAACAAGCAAAAGGAAAAGATGGAGTGCCTGCAGTCAGAG
AAGCTGGAAAGTCTGAATGCCGAACTAAAGACCCAAATTGAGGAGCTGAAGAATGAGAAGTAGTATTTGATATACATGCT
CAACCTGTGTCAGTCCACGGGTATTGTCTGGGCTCAGAATGGGCAGACTCCAGAAGATGAGAGAAACCTCTTTATCCGAC
AGATAAAAGAAGGAACACTAAACAGC
ORF - retro_itri_893 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.64 % |
Parental protein coverage: |
79.56 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TPFVKEELRFAIQNKHLCHRMSSALESVTVSDRPLEMSVTKAEVAPEEDERKKRRRERNKIAAAKCRNKK |
| TPFVKEELRFAIQNKHLCH.MSSALESV..SDRPLEMSVTKAEVAPE.DERKKR..ERNKI.A.KC.NK. |
Retrocopy | TPFVKEELRFAIQNKHLCHWMSSALESVMISDRPLEMSVTKAEVAPEDDERKKRQWERNKITATKCQNKQ |
|
Parental | KEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEG |
| KEK.ECLQ..SEKLES.NAELK.QIEELKNEK..LIYMLNL...T.IV.AQNG.TPEDERNLFI.QIKEG |
Retrocopy | KEKMECLQ--SEKLESLNAELKTQIEELKNEK*YLIYMLNLCQSTGIVWAQNGQTPEDERNLFIRQIKEG |
|
Parental | TLQS |
| TL.S |
Retrocopy | TLNS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_893 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_893 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.