RetrogeneDB ID: | retro_lafr_1085 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_67:11857632..11858040(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRTAP12-4 | ||
Ensembl ID: | ENSLAFG00000003471 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.9 % |
Parental protein coverage: | 92.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MCHTSCSTGCQSVCCPPPRCVPTACCSPLGCGSSCCHPVSCMTLLCRPVCGVSACCVPSPCQATCCVPIR |
MCHT.CSTGCQS.CCP.P.CVPTACCSPLGCGSSCC.PVSC.TLLC.PVCGV...C..SPC.A....... | |
Retrocopy | MCHTCCSTGCQSACCPAPCCVPTACCSPLGCGSSCCCPVSCVTLLCPPVCGVASSC-QSPCGAASSCSGG |
Parental | CKPALCVPVRCSTVVTCCLPVSCKPAVCVPVSCKPAASVPVSCKPAMYLVPSCQSSCCRQPSCPILAC |
C...LC.PV.C.....C..........CVPVSC.P...V..SC.......PSC.....R...C....C | |
Retrocopy | CQ-FLCCPVACGQAPSCSSACCVPSPCCVPVSCRPTVCVAPSCQSSCCCQPSCPTLVYRPITCGTHRC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000003471 | 3 retrocopies |
retro_lafr_1084, retro_lafr_1085 , retro_lafr_1086,
|
Macaca mulatta | ENSMMUG00000022561 | 1 retrocopy |