RetrogeneDB ID: | retro_macu_4 | ||
Retrocopy location | Organism: | Wild banana (Musa acuminata) | |
| Coordinates: | chrUn_random:105306561..105306804(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | GSMUA_AchrUn_randomG21490_001 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GSMUA_AchrUn_randomG21450_001 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_macu_4
ATGGGAATGAATCGAAATTATTCTACCATATCAAATCTAGAACCTTGGTTCTTCCTAGAATTTGTGTTACCTTTTGATGC
ATATAAGATTAAACCGTGGATCATACCTATCGAATTACTTCTTTCTAATATTTATTTTGAAAATAATATTAGTCAAAATC
AAAATAAAAATAATATTAGTAAAAATAAAAATAAAAATAATATTAGTCAAAATCAAAATGAAAAAAATACAAGTAAAAAT
TAA
ORF - retro_macu_4 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.5 % |
| Parental protein coverage: | 60.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MRMNRNYSTILNLEPWFFLEFVLPFDAYKIKSWIILIKLLLSNIYYENDII--NIKINKILDYTRSNIKK |
| M.MNRNYSTI.NLEPWFFLEFVLPFDAYKIK.WII.I.LLLSNIY.EN.I.....K.N........NI.. | |
| Retrocopy | MGMNRNYSTISNLEPWFFLEFVLPFDAYKIKPWIIPIELLLSNIYFENNISQNQNKNNISKNKNKNNISQ |
| Parental | DNKKKQSKKN |
| ....K...KN | |
| Retrocopy | NQNEKNTSKN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_4 was not experimentally validated.
Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Musa acuminata | GSMUA_AchrUn_randomG21450_001 | 1 retrocopy |
retro_macu_4 ,
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