RetrogeneDB ID: retro_macu_5

Retrocopy location

• Organism: Wild banana (Musa acuminata)
• Coordinates: 1:12032347..12032704(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: GSMUA_Achr1G16060_001
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GSMUA_Achr10G06300_001
• Aliases: None
• Description: None

Sequence

>retro_macu_5
ATGGCCACGGTGAACCGTCGCCCTCGCGTGTTCTTCGACATCACCATCAACGATGCACCGGTGGGGCGGATCGTGATGGA
GCTGTATTCAGACGTGGTGCCGAAGACGGCCGGGAACTGCCGGGCGTTGTGCACCGGGGAGAGGGGCGTGGAGCGCTCCG
GGAAGCCGCTGCACTACAAGGGGACGCGCTTCCTCCGGGTGACCCCGGGCTTCATGTGCCAGGGCCGCGACGTCGCCCAC
AACGACGGCACCGGAATGGAGTCGATCTACGGCGGCAAGTTCGCGGACGAGAACTTCACCACGAAGCACCGGCTGGTGTC
CGTGGCGAACGGGGGCCGGGACATGAACGGATCGTAG

Alignment

ORF - retro_macu_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.29 %
• Parental protein coverage: 56.78 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KVYFDVEIGGKPAGRIVMGLFGKTVPKTAENFRALCTGEKGVGKSGKALHFKGSTFHRIIPSFMIQGGDF
          .V.FD..I...P.GRIVM.L....VPKTA.N.RALCTGE.GV..SGK.LH.KG..F.R..P.FM.QG.D.
Retrocopy RVFFDITINDAPVGRIVMELYSDVVPKTAGNCRALCTGERGVERSGKPLHYKGTRFLRVTPGFMCQGRDV

Parental  THGDGRGGESIYGMTFADENFKLKHTGPGFLSMANAGRDTNGS
          .H.DG.G.ESIYG..FADENF..KH......S.AN.GRD.NGS
Retrocopy AHNDGTGMESIYGGKFADENFTTKHR---LVSVANGGRDMNGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Musa acuminata was not studied using RNA-Seq expression data.

ChIP-Seq

Musa acuminata was not studied using ChIP-Seq data.

EST

Musa acuminata was not studied using EST data.

TSS

Musa acuminata was not studied using FANTOM5 data.

Lab

retro_macu_5 was not experimentally validated.

Homology

Retrocopy orthology:

Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Musa acuminata	GSMUA_Achr7G17320_001	1 retrocopy	retro_macu_7,
Musa acuminata	GSMUA_Achr10G06300_001	1 retrocopy	retro_macu_5 ,