RetrogeneDB ID: | retro_macu_97 | ||
Retrocopy location | Organism: | Wild banana (Musa acuminata) | |
| Coordinates: | chrUn_random:112925846..112926150(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GSMUA_AchrUn_randomG26900_001 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_macu_97
AAAAACGTGGCAGTCATAAATTTTGCAAAATGTCAAGGTTTGATAGGTTCTTTTTGGACCATCTCAAAAATTTAAAAAAT
TGATGATTCCCAAAATATTTACCCTAGTGAAGTCTTATGAGAATGGTTTCACAGAAAAATTTAACGGTCATAAAGATTGC
ACAAAGTCGAGATTCAATCGGTTTTGTATGCACTGTCTCGAAATTTTATTTACCATTCCTAACATATTATCCCAAGAAAA
TTGGGGCATATTGTTGACAATTCCCAACATACTAGCCCACGAAAATTTGTACATGCCGAGTAGG
ORF - retro_macu_97 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.86 % |
| Parental protein coverage: | 92.04 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KNVIVKSFC-NVEVRSIFCALSQKFKILTIPKKFTFRKSYMLGFVKKRGGHKFCTKSRFDRFNRFIMNRL |
| KNV.V..F..NV.V.......SQKFK.L.IPK.FT..KSY..GF..K..GHK.CTKS...RFNRF.M..L | |
| Retrocopy | KNVAVINFA>NVKV**VLFGPSQKFKKLMIPKIFTLVKSYENGFTEKFNGHKDCTKS---RFNRFCMHCL |
| Parental | KILLTIPNILAQENLGIMLTIPNILSQENLYKPSR |
| .IL.TIPNIL.QEN.GI.LTIPNIL..ENLY.PSR | |
| Retrocopy | EILFTIPNILSQENWGILLTIPNILAHENLYMPSR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_97 was not experimentally validated.
Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 7 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Musa acuminata | GSMUA_AchrUn_randomG26900_001 | 7 retrocopies |
retro_macu_100, retro_macu_102, retro_macu_108, retro_macu_110, retro_macu_41, retro_macu_97 , retro_macu_98,
|