RetrogeneDB ID: | retro_mdom_435 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:518870695..518871133(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000010588 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.85 % |
Parental protein coverage: | 66.06 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | SRYAMGVKAVGPLQYGSSMAALFRVGISEPEPGRPEFQVMFTDPKEAQGLMEPKAEVPFPPVRRRRTQPQ |
S.Y.MG.KAVGPL...SSM...F.V..SE..P....FQVM..DPK..QGLM.PK..VPF........QP. | |
Retrocopy | SHYTMGAKAVGPLH*DSSMTVFFPVSTSESKPRQLKFQVMSMDPKDVQGLMQPKVKVPFSSSHLSPPQP* |
Parental | PTCPEPAPLALPKRDPLTWFGILVPQSLRQAQGSFRAALLMAGEVAGLQSRIEWGRGQIQILLQEKRKLL |
.TCP.P..L..P..D.LTW.GILV.QSL....G.F.AALLMA.EV.GLQ..IE..R.QIQ.L.QEK.KL. | |
Retrocopy | GTCP*PTSLPSPEYDHLTWLGILVSQSLQKT*GNFLAALLMAREVSGLQN*IE*ERNQIQTLQQEKQKLF |
Parental | DQLKVA |
DQL.VA | |
Retrocopy | DQLMVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Monodelphis domestica | ENSMODG00000010588 | 2 retrocopies |
retro_mdom_200, retro_mdom_435 ,
|
Mus musculus | ENSMUSG00000042111 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005099 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000166 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000012598 | 1 retrocopy |