RetrogeneDB ID: | retro_mdom_923 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:454396064..454396573(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2R2 | ||
Ensembl ID: | ENSMODG00000003686 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2R 2 [Source:HGNC Symbol;Acc:19907] |
Percent Identity: | 52.54 % |
Parental protein coverage: | 73.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD |
VD.SD.........G...T....GYFK.HI.FP.....S..TFRFL.KMW.P.I.ENG...I.IL....D | |
Retrocopy | VDYSDVHSQQLQM-GSSHTPFQKGYFKHHIEFPLG*SFSTLTFRFLSKMWQP-ISENGNMVILILQLALD |
Parental | DPQSGELPSERWNPTQNVRTILLSVISLLNEPNT-FSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVLA |
DP...EL....W....NV.T.LL.VI..L.EPN..FSPANVD.SVMFRKW.D..GK.KEYA.IIR...LA | |
Retrocopy | DPKR-ELFLDKWHMAHNVSTLLLNVILILIEPNI<FSPANVDVSVMFRKWKDYEGKGKEYAKIIRQ*ILA |
Parental | TKAEAEKDGVKVPTTLAEYCIKTKVPSNDNSSDLLYD |
.....E..G...PT..A.Y.IK..VPSNDNS.DL.YD | |
Retrocopy | FMSKTESEG---PTIVAKYSIKSQVPSNDNSLDLFYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000006793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003686 | 2 retrocopies |
retro_mdom_45, retro_mdom_923 ,
|
Nomascus leucogenys | ENSNLEG00000005052 | 3 retrocopies |