RetrogeneDB ID: retro_meug_1115

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold29564:12499..13333(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNAJB12
• Ensembl ID: ENSMEUG00000002024
• Aliases: None
• Description: DnaJ (Hsp40) homolog, subfamily B, member 12 [Source:HGNC Symbol;Acc:14891]

Sequence

>retro_meug_1115
ATGGAATCCAATAAAGATGAAGCCGAGCGCTGTATCTCCATCGCCCTCAGCGCCATCAAGAGCCACCAACCCGAGCGGGC
TCTACGCTTCCTGGAAAAGGCACAGAGGCTTTATCCGACTCCAGGGGTGCACACATTGATTGAATCTCTCACCCAGAATG
GACAGACCTTTCATGGCCAGACCAGGCCAAAAGACACAGCCACTTCTCACCGGAAAATGGGTGGGGGAGAAACCCTTTCT
GCCAATGGTGAGGTTAGAGCAGAGGGCACGAAAGGCTACACACAGGATCAGATGGAAGCTGTGAAAAGGGTGAAGCAGTG
TAAAGACTACTATGAGATCCTGGGTGTGAGCAGAGAAGCCTCGGAAGAGGCCTTGAAGAAGGCTTACCGAAAACTGGCCC
TCAAGTTTCACCCGGACAAGAACCACGCTCCTGGTGCCACAGAGGCTTTTAAAGCCATCGGTACCGCCTACGCGGTGCTA
AGCAACTCTGAAAAGAAGAGGCAGTACGACAAGTTTGGGGACGAAAAGAGCCAGGCTGCCCAGCAGGGCCAGGACCACGG
ACACTTCCACCGGGGCTTTGAAGCAGACATCTCCCCTGAGGACCTCTTCAACATGTTCTTTGGTGGTGTCTTTCCTTCCA
GTAACATCCATGTCTACAGAAATGACCACGTGAGGTACACCTACCACCAAAGGCCTGACCGCCGCTGGGAGAACCAGGGT
GATGGCGGCCTGGGGCTATCTGTGCTGCTGATGCCCATCCTCATCCTAATCACTGTGTCAGCATTCAACCAGATGATGGT
CTCCAGGCCACCATACAGCCTCAGCCAAAGACCG

Alignment

ORF - retro_meug_1115 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.85 %
• Parental protein coverage: 74.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MESNKDEAERCITIALSAIKSRQPERALRFLEKAQRLYPTPRVRALIESLTQNGQTSHGQTRPKDTATSH
          MESNKDEAERCI.IALSAIKS.QPERALRFLEKAQRLYPTP.V..LIESLTQNGQT.HGQTRPKDTATSH
Retrocopy MESNKDEAERCISIALSAIKSHQPERALRFLEKAQRLYPTPGVHTLIESLTQNGQTFHGQTRPKDTATSH

Parental  RKTGGGETPSANGEAGGEGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEEDLKKAYRKLALKFHPDK
          RK.GGGET.SANGE...EGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEE.LKKAYRKLALKFHPDK
Retrocopy RKMGGGETLSANGEVRAEGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEEALKKAYRKLALKFHPDK

Parental  NHAPGATEAFKAIGTAYAVLSNTEKRRQYDQFGDEKSQAARQGQGHGDFHRGFEADISPEDLFNMFFGGG
          NHAPGATEAFKAIGTAYAVLSN.EK.RQYD.FGDEKSQAA.QGQ.HG.FHRGFEADISPEDLFNMFFGG.
Retrocopy NHAPGATEAFKAIGTAYAVLSNSEKKRQYDKFGDEKSQAAQQGQDHGHFHRGFEADISPEDLFNMFFGGV

Parental  FPSSNIHVYSNGRMRYTYHQRPDRR-ENQGDGGLGLFVQLMPILILIIVSALSQMMVSSPPYSLSHRP
          FPSSNIHVY.N...RYTYHQRPDRR.ENQGDGGLGL.V.LMPILILI.VSA..QMMVS.PPYSLS.RP
Retrocopy FPSSNIHVYRNDHVRYTYHQRPDRRWENQGDGGLGLSVLLMPILILITVSAFNQMMVSRPPYSLSQRP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1115 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1115 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007303	1 retrocopy	retro_cjac_1200,
Dasypus novemcinctus	ENSDNOG00000009977	1 retrocopy	retro_dnov_866,
Homo sapiens	ENSG00000148719	1 retrocopy	retro_hsap_2273,
Gorilla gorilla	ENSGGOG00000000683	1 retrocopy	retro_ggor_1691,
Macropus eugenii	ENSMEUG00000002024	2 retrocopies	retro_meug_1115 , retro_meug_1511,
Pongo abelii	ENSPPYG00000002353	1 retrocopy	retro_pabe_1945,
Pan troglodytes	ENSPTRG00000002613	1 retrocopy	retro_ptro_1608,