RetrogeneDB ID: retro_meug_1511

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold43078:2529..3364(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNAJB12
• Ensembl ID: ENSMEUG00000002024
• Aliases: None
• Description: DnaJ (Hsp40) homolog, subfamily B, member 12 [Source:HGNC Symbol;Acc:14891]

Sequence

>retro_meug_1511
ATGAAATCCAATAAAGATGAAGCAGAGCCTTGTATCACCATCACCATCAGAACCATCAAGAGTCACCAACCCGAGCGGGC
ACTGCACTTTCTGGAAAAGTCACAGAGGTTTTAACTGATGTCAGTGATGAACAAATTGATTGAATCAGTCACCCATAATG
GACATACCTCTCATATTCAGGCCAGGTCAAAAGACATAGCCACTTCTCACTAAAGAACAGGTGGGGGAGAAACCCCTTCT
GCTAATGGTGAGGCTAGAGGAGAGGGCATAAAAGGCTACATGCAGGACCAGATGGAAGCTGTCAAAAAGGTGAAGCAGTT
TAAAGACTACTATGTGATCCTGGGTGCAAGCAGAGAAGCATTGAAAGATAACTTGAAGAAGACACACCAAAAACTGACCC
TCAAATTTCACCCTGACAGGAACCATGCCCCTGGTGTCACAAAGGCTTTTAAAAGCATTGGTACCATATATGCAATGCTG
TGCAACTCTGAAAAGAGGAGGCAGTGCAACTAGTTTTAGGATGCAAAGAGCCAGGATGCTCAACAGGGCAGATCCACGGG
GACTTCCACCAGGGCTTTGAAGGAGGCATCTCTCCTGGGGACCTCTTCAACATGTTCTTTGGTGGTGGCTTTCTTTCCAT
TAACATTATGTGTACAACAATGGCTGCATACGGTACACCTACCCGCAAAAGCCTGACCACTGGGAGAACCAAGGTGATGG
TGGCCTGGACTTGTTTGTCTAGCTGATTCCCATCCTCATCAAAATCAGGAAGATGATAGTCTCCAGTCCATCATACTGCC
TCAGGCAAAGACCATTACTGGGACATGTCCACAAG

Alignment

ORF - retro_meug_1511 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.19 %
• Parental protein coverage: 73.8 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MESNKDEAERCITIALSAIKSRQPERALRFLEKAQRLYPTPRVRALIESLTQNGQTSHGQTRPKDTATSH
          M.SNKDEAE.CITI....IKS.QPERAL.FLEK.QR.........LIES.T.NG.TSH.Q.R.KD.ATSH
Retrocopy MKSNKDEAEPCITITIRTIKSHQPERALHFLEKSQRF*LMSVMNKLIESVTHNGHTSHIQARSKDIATSH

Parental  RKTGGGETPSANGEAGGEGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEEDLKKAYRKLALKFHPDK
          ..TGGGETPSANGEA.GEG.KGY.QDQMEAVK.VKQ.KDYY.ILG.SREA....LKK...KL.LKFHPD.
Retrocopy *RTGGGETPSANGEARGEGIKGYMQDQMEAVKKVKQFKDYYVILGASREALKDNLKKTHQKLTLKFHPDR

Parental  NHAPGATEAFKAIGTAYAVLSNTEKRRQYDQFGDEKSQAARQ-GQGHGDFHRGFEADISPEDLFNMFFGG
          NHAPG.T.AFK.IGT.YA.L.N.EKRRQ...F.D.KSQ.A.Q.GQ.HGDFH.GFE..ISP.DLFNMFFGG
Retrocopy NHAPGVTKAFKSIGTIYAMLCNSEKRRQCN*F*DAKSQDAQQ<GQIHGDFHQGFEGGISPGDLFNMFFGG

Parental  GFPSSNI-HVYSNGRMRYTYHQRPDRRENQGDGGLGLFVQLMPILILI---IVSALSQMMVSSPPYSLSH
          GF.S.NI..VY.NG..RYTY.Q.PD..ENQGDGGL.LFV.L.PILI.I...IVS..S......P.....H
Retrocopy GFLSINI<YVYNNGCIRYTYPQKPDHWENQGDGGLDLFV*LIPILIKIRKMIVSSPSYCLRQRPLLGHVH

Parental  R
          .
Retrocopy K

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1511 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1511 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007303	1 retrocopy	retro_cjac_1200,
Dasypus novemcinctus	ENSDNOG00000009977	1 retrocopy	retro_dnov_866,
Homo sapiens	ENSG00000148719	1 retrocopy	retro_hsap_2273,
Gorilla gorilla	ENSGGOG00000000683	1 retrocopy	retro_ggor_1691,
Macropus eugenii	ENSMEUG00000002024	2 retrocopies	retro_meug_1115, retro_meug_1511 ,
Pongo abelii	ENSPPYG00000002353	1 retrocopy	retro_pabe_1945,
Pan troglodytes	ENSPTRG00000002613	1 retrocopy	retro_ptro_1608,