RetrogeneDB ID: retro_meug_1141

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold303321:504..1042(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007772
• Aliases: None
• Description: None

Sequence

>retro_meug_1141
TTGGATGAGTCCACAAAGATCATCATAAGGCAGACTCGATGTGGGATTCGACATATTGCTGACTACTCATTTATTTCTGA
GAAGTCCAAAATTAGAAATAATCCCTTAACCTACAGGATCATCAAATATCCAAGGGGCATGAATTGTAGGAGAGTTGAAG
ACTTTGCAGAAGGCAGCAGAAGTTTGGAGTAGTGTGACACACTTGAAGTTTTGACGAATATACAAACAAGATTCTGACAC
TGAGTTTGCTTTCCTGGCTTGAGATCATGGAGATGCTTACCCCTTTGATGTAGAAAGAAACATCTTCGCTCATACTTTTG
CCCCAGATTCTGACTACCAAAGAGGCATCCACTATGATAGTGATGAAGAATGATCATATTATGATAAGGGAACCAATCCC
TTCCCGGTGGCTGTTCATGAGATAGACCACTCTCTGGACCTGGGACAGTCTCAAGGTTCAGACTCCCTCACGTTCCCCAA
CTATCAATATCAGAACCCAAGATTCTTCAGGAAGAGTGATGATGACATAACAGGGATC

Alignment

ORF - retro_meug_1141 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.78 %
• Parental protein coverage: 82.57 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LDEPTKAIIRQPRCGVRDVADYSFFPGKPKIRNNPITYSIINYPRGMNHRTVE-KILRK-AAEVWSSVTP
          LDE.TK.IIRQ.RCG.R..ADYSF...K.KIRNNP.TY.II.YPRGMN.R.VE....R..AAEVWSSVT.
Retrocopy LDESTKIIIRQTRCGIRHIADYSFISEKSKIRNNPLTYRIIKYPRGMNCRRVE<RLCRR<AAEVWSSVTH

Parental  LKFRRVYKQHSDIEFAFLAGDHGDAYPFDGEGNTLAHAFAPVPNYQGAIHFDRDEEWSYYDEGVNLFVVA
          LKF.R.YKQ.SD.EFAFLA.DHGDAYPFD.E.N..AH.FAP...YQ..IH.D.DEE.SYYD.G.N.F.VA
Retrocopy LKF*RIYKQDSDTEFAFLA*DHGDAYPFDVERNIFAHTFAPDSDYQRGIHYDSDEE*SYYDKGTNPFPVA

Parental  VHEIGHALGLGHSQDSDSIMFPNYQYQDPKFFRLSDDDIIGI
          VHEI.H.L.LG.SQ.SDS..FPNYQYQ.P.FFR.SDDDI.GI
Retrocopy VHEIDHSLDLGQSQGSDSLTFPNYQYQNPRFFRKSDDDITGI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1141 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1141 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007772	12 retrocopies	retro_meug_1141 , retro_meug_1271, retro_meug_1415, retro_meug_15, retro_meug_1655, retro_meug_1863, retro_meug_2031, retro_meug_2158, retro_meug_939, retro_meug_948, retro_meug_956, retro_meug_995,