RetrogeneDB ID: retro_meug_2158

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold96524:10841..11189(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007772
• Aliases: None
• Description: None

Sequence

>retro_meug_2158
TTGAAGTTCCAAAGAGTGTATAAACAAGATTCTGACATTAAGTTTGTTTTCCTGTCTGGAGATCATGGAGATACCTATTT
GTTTGATGGAGAAGGAAACATCCTGGCTCATGTTTTTGCCCCAGATCCTGACTACCAAGGAGCTGTCCAGTTTGACAGTG
ATGAAGAATGGTCATATTCTGAGGAGGGAACCAACCTCTTCCTGGTGGCCATTCATGAGATAGGCCATGATCTGGGCCTA
GGACACTCTCAGGATTCAGACTCCATCATGTTCCCCAACTATCAATATCCGGACTCAAAACTCTTCATACTCAGTGATGG
TGATATAATAGGGATCCAGATCTTTTAT

Alignment

ORF - retro_meug_2158 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.72 %
• Parental protein coverage: 53.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LKFRRVYKQHSDIEFAFLAGDHGDAYPFDGEGNTLAHAFAPVPNYQGAIHFDRDEEWSYYDEGVNLFVVA
          LKF.RVYKQ.SDI.F.FL.GDHGD.Y.FDGEGN.LAH.FAP.P.YQGA..FD.DEEWSY..EG.NLF.VA
Retrocopy LKFQRVYKQDSDIKFVFLSGDHGDTYLFDGEGNILAHVFAPDPDYQGAVQFDSDEEWSYSEEGTNLFLVA

Parental  VHEIGHALGLGHSQDSDSIMFPNYQYQDPKFFRLSDDDIIGIQSLY
          .HEIGH.LGLGHSQDSDSIMFPNYQY.D.K.F.LSD.DIIGIQ..Y
Retrocopy IHEIGHDLGLGHSQDSDSIMFPNYQYPDSKLFILSDGDIIGIQIFY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2158 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2158 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007772	12 retrocopies	retro_meug_1141, retro_meug_1271, retro_meug_1415, retro_meug_15, retro_meug_1655, retro_meug_1863, retro_meug_2031, retro_meug_2158 , retro_meug_939, retro_meug_948, retro_meug_956, retro_meug_995,