RetrogeneDB - Retrocopy retro_meug

                        
>retro_meug_1243
CAGATAAGTAATGGAACATCATCTGTGATAGTCTCCAGGAAGCGACCATCTGAAGGAAATTATCAAAAAGAAAAGGACTT

GTGTATTAAGTATTTTGACCAGTGGTCTGAATCAGATCAGGTTCAATTTGTGGAACATCTGATTTCACGAATGTGTCATT

ATCAGCATGGACATATTAACTCTTACCTGAAGCCCATGTTGCAGCGGGACTTCATCACAGCTTTACCAGAGCAAGGCTTA

GATCACATAGCGGAAAACATCCTTTCTTACCTGGATGCTAGATCTCTGTGTGCAGCAGAATTGGTGTGTAAAGAATGGCA

GCGCGTGATCTCTGAAGGAATGCTTTGAAAGAAATTGATTGAAAGGATGGTACGGACTGATCCACTCTGGAAGGGATTTT

CAGAAAGAAGAGCATGGGATAAGTACCTGTTTAAAAACAGACCTACAGATGGTCCTCCCAATTCATTTTATAGGTCACTG

TACCCAAAGATTATCCAGGATATAGAGACTATAGAATCTAATTGGAGGTGTGGGAGACATAACTTGCAGAGAATTCAGTG

CCGCTCTGAAAATAGTAAAGGTGTCTACTGTTTACAGTATGATGATGAAAAGATTATCAGTGGCTTAAGGGATAACTCTA

TTAAGATTTGGGATAAAACCAGCTTGGAATGTTTGAAAATACTAACAGGGCACACAGGCTCAGTCCTTTGTCTGCAGTAT

GATGAGAGGGTCATTGTAACTGGCTCCTCAGACTCCACAGTAAGAGTTTGGGATGTGAACACAGGAGAAGTTCTGAATAC

ATTGATCCACCACAATGAGGCAGTCCTCCACCTGCGCTTCAGCAATGGCTTAATGGTGACTTGTTCAAAGGACAGGTCCA

TTGCAGTGTGGGACATGGCGTCACCCACTGATATCACACTTCGACGCGTATTGGTTGGCCACCGAGCAGCATTTAATGTG

GTTGACTTTGATGACAAGTATATTGTCTCTGCTTCTGGTGACAGGACCATTAAAGTCTGGAGCACAAGTACTTGTGAATT

TGTGCGTACTCTGAATGGGCACAAGCATGGCATTGCCTGCCTGCAGTATAGGGATCGACTAGTTGTAAGTGGGTCCTCAG

ACAATACCATT

ORF - retro_meug_1243 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	85.49 %
Parental protein coverage:	71.51 %
Number of stop codons detected:	1
Number of frameshifts detected:	0

Retrocopy - Parental Gene Alignment:

                                ParentalKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRD
...NGTSS.IV...R.....Y.KEK.LC.KYF.QWSESDQV.FVEHLIS.MCHYQHGHINSYLKPMLQRD
RetrocopyQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVQFVEHLISRMCHYQHGHINSYLKPMLQRD
ParentalFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWG
FITALP..GLDHIAENILSYLDA.SLCAAELVCKEW.RV.S.GML.KKLIERMVRTD.LW.G..ERR.W.
RetrocopyFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGML*KKLIERMVRTDPLWKGFSERRAWD
ParentalQYLFKNKPPDGVAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSG
.YLFKN.P.DG..PPNSFYR.LYPKIIQDIETIESNWRCGRH.LQRI.CRSE.SKGVYCLQYDD.KI.SG
RetrocopyKYLFKNRPTDG--PPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG
ParentalLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL
LRDN.IKIWDK..LEC..ILTGHTGSVLCLQYDERVI.TGSSDSTVRVWDVNTGE.LNTLIHH.EAVLHL
RetrocopyLRDNSIKIWDKTSLECLKILTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHL
ParentalRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV
RF.NG.MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA.NVVDFDDKYIVSASGDRTIKVW.TSTCEFV
RetrocopyRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAFNVVDFDDKYIVSASGDRTIKVWSTSTCEFV
ParentalRTLNGHKRGIACLQYRDRLVVSGSSDNTI
RTLNGHK.GIACLQYRDRLVVSGSSDNTI
RetrocopyRTLNGHKHGIACLQYRDRLVVSGSSDNTI

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Macropus eugenii was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_meug_1243 retrocopy.

TSS - click to see more details

Macropus eugenii was not studied using FANTOM5 data.

Lab - click to see more details

retro_meug_1243 was not experimentally validated.

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013579	1 retrocopy	retro_meug_1243 ,
Pongo abelii	ENSPPYG00000002583	1 retrocopy	retro_pabe_1856,
Rattus norvegicus	ENSRNOG00000016280	1 retrocopy	retro_rnor_603,

	RetrogeneDB ID:	retro_meug_1243
Retrocopy location	Organism:	*Wallaby (Macropus eugenii)*
	Coordinates:	Scaffold338350:315..1446(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	BTRC
	Ensembl ID:	ENSMEUG00000013579
	Aliases:	None
	Description:	beta-transducin repeat containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:1144]

Parental	KLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRD
	...NGTSS.IV...R.....Y.KEK.LC.KYF.QWSESDQV.FVEHLIS.MCHYQHGHINSYLKPMLQRD
Retrocopy	QISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVQFVEHLISRMCHYQHGHINSYLKPMLQRD

Parental	FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWG
	FITALP..GLDHIAENILSYLDA.SLCAAELVCKEW.RV.S.GML.KKLIERMVRTD.LW.G..ERR.W.
Retrocopy	FITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGML*KKLIERMVRTDPLWKGFSERRAWD

Parental	QYLFKNKPPDGVAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSG
	.YLFKN.P.DG..PPNSFYR.LYPKIIQDIETIESNWRCGRH.LQRI.CRSE.SKGVYCLQYDD.KI.SG
Retrocopy	KYLFKNRPTDG--PPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISG

Parental	LRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL
	LRDN.IKIWDK..LEC..ILTGHTGSVLCLQYDERVI.TGSSDSTVRVWDVNTGE.LNTLIHH.EAVLHL
Retrocopy	LRDNSIKIWDKTSLECLKILTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHL

Parental	RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV
	RF.NG.MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA.NVVDFDDKYIVSASGDRTIKVW.TSTCEFV
Retrocopy	RFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAFNVVDFDDKYIVSASGDRTIKVWSTSTCEFV

Parental	RTLNGHKRGIACLQYRDRLVVSGSSDNTI
	RTLNGHK.GIACLQYRDRLVVSGSSDNTI
Retrocopy	RTLNGHKHGIACLQYRDRLVVSGSSDNTI

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_meug_1243