RetrogeneDB ID: | retro_meug_1308 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold363399:171..770(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP2A | ||
Ensembl ID: | ENSMEUG00000013531 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 2A [Source:HGNC Symbol;Acc:30216] |
Percent Identity: | 72.28 % |
Parental protein coverage: | 90.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MDLLFGRRKTPEELLRQNQRALNRAM-RELDRERQKLETQEKKIIADIKKMAKQGQMDAVKIMARDLVRT |
M.LLFG....P.E.L..NQ.ALN.AM...LDRE.QKLE.QEK.IIADIKKM.KQGQ.DAVKIM...LV.T | |
Retrocopy | MNLLFGLQ*IPKEMLWKNQQALNGAMCMGLDRELQKLEAQEKQIIADIKKMTKQGQIDAVKIMTHNLV-T |
Parental | RRYVSKFVMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMK |
.RYVSKFV.M..NIQ..SLKIQ.LKSN.S.AQAMKG.TK..G.MNRQLKLPQIQKIM.EFE.Q..IMDMK | |
Retrocopy | CRYVSKFVRM*VNIQVMSLKIQMLKSNHSLAQAMKGFTKVIGIMNRQLKLPQIQKIMLEFEHQTGIMDMK |
Parental | EEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLS-LTDELSNLPSTGGSLSVAAGGKKAEP |
EEMMNDAID.AMGDEEDE.ESD..VSQVLD.L.LS.LTDELSNLP...GS.....GGKK.EP | |
Retrocopy | EEMMNDAIDKAMGDEEDEKESDVMVSQVLDDLSLS<LTDELSNLPFISGSFFMTVGGKKTEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000012195 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013531 | 1 retrocopy |
retro_meug_1308 ,
|
Mus musculus | ENSMUSG00000033916 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005628 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010511 | 1 retrocopy |