RetrogeneDB ID: retro_meug_1359

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold3806:78834..80049(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NASP
• Ensembl ID: ENSMEUG00000001037
• Aliases: None
• Description: nuclear autoantigenic sperm protein (histone-binding) [Source:HGNC Symbol;Acc:7644]

Sequence

>retro_meug_1359
CTGGATGTGGATAGTGAATCTAAGAAGCTGCTGGGCTTGGGGCAGAAACATCTGGTAATGGGAGACATCCCAGCAGCTGT
CAATGCATTCCAGGAAGCAGCTAGTCTCTTGGGTAAGAAGTATGGAGAGACAGCTAATGAGTGTGGAGAAGCCTTCTTTT
ACTATGGGAAGTCTCTTCTGGAGTTGGCAAGAATGGAGAATGGTGTGTTAGGAAATGCCCTGGATGGAGTCCCAGTGGAT
GAAGATGGAGAGAGAGCAGAAGATCAGTCTATGATAGAGAGTACTGATAACGTAGAGGAGGAAGCAAGGGTGGTGTTGAA
AGAACAGGGCTCTGATGCCACAAAGAACCAAGAGGCAGCCCAGAAAGCCCAGGCTGAGGCTCCTGGGGTGAAGGCTGAGG
CATTGGCTGCCCCCCCTGTAGGGGAAGCCTGGGGACGTCCAGTGGATGCTGAGGGGACAGGAGCTGATGTCGAGATGAAA
GAGGACGAGACCCAGGCAGAAGAAACCCCTGCAAGCCCCAAGAAGATTCCGAGCACAGCCCAGGAGCCCAAGGCAGCATC
TGCTTCGGAGGAGCTGTCCACAGGCTCAGAAGCCACAGTAGCTGCTCCCCAAGATGGAAAGCCAGAGGAAGAGAAGCCGG
CCAGAGAAGAAGCAGTAGTGGAGGAAAAACAGGGCGAGGTAGTTGGAAGAACAGAGGAAAGGTCCAAAGATGCTCCTGAA
GAGCAGCCGGCTCCGGAACAGCAGGAAGCTGCAGTCAGGGTGGAAGGAGAGGCAGCAGATTGGGCAGGAGAGGGGGAGAC
AGAGAAGGCAGAGGAGGCAGCCTCAGTCCCAGAAGCAGCATTGGAGACTGAAAAAGGAGAGGAGAAAGAGGGCCATGCTA
AAGAGGAGCCAGCAGAGGCTTCAGCTTCAGATGAGGCTGAGGCCGTGGTGCTGAGTGAGGACGAGGCCAAGGAGCAGCCA
GTAGCCACCCACACAGAGGGTCAAGACAGCCCACCCTCTGACCCAGGGAAGGTGGCTTCTGCAGAAGACCAGGCTGCCAA
GGAGCTCACAGACACACAAGAGAACTCTGCTCCTGACGCAGAGCCTCCAGCACAGGCAGAGCCTGCCCAGGAGGGGCCCA
AGGGACCCCCAGAAGACTCTAAGGCAGCTGGAGATGGGCCAGAGACGGGCACTGTTGACCAGGTGGCTCTAGGAACACCC
CCTGAAGAGAAAGAT

Alignment

ORF - retro_meug_1359 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.71 %
• Parental protein coverage: 55.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LDVDSESKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKYGETANECGEAFFYYGKSLLELARMENGVL
          LDVDSESKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKYGETANECGEAFFYYGKSLLELARMENGVL
Retrocopy LDVDSESKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKYGETANECGEAFFYYGKSLLELARMENGVL

Parental  GNALDGVPVDEDGERAEDQSMIESTDNVEEEARVVLKEQGSDATKNQEAAQKAQAEAPGVKAEAGEAWGR
          GNALDGVPVDEDGERAEDQSMIESTDNVEEEARVVLKEQGSDATKNQEAAQKAQAEAPGVKAEA..A...
Retrocopy GNALDGVPVDEDGERAEDQSMIESTDNVEEEARVVLKEQGSDATKNQEAAQKAQAEAPGVKAEALAA--P

Parental  PV-DAEGTGADVEMKEDETQAEEAPASPEKIPSTPGAEAASASEELSTGSEATVAAPQD---GKPEEEKP
          PV..A.G...D.E.........E.....E..P..P......A.E....................P...KP
Retrocopy PVGEAWGRPVDAEGTGADVEMKEDETQAEETPASPKKIPSTAQEPKAASASEELSTGSEATVAAPQDGKP

Parental  AREEAGEEKQ--GEVVGRAEERSKDAPEEQP----APEQQEAAVRVEGEAADRAGEGETEKAEEAASVPE
          ..E....E.....E..G....R........P....APEQQEAAVRVEGEAAD.AGEGETEKAEEAASVPE
Retrocopy EEEKPAREEAVVEEKQGEVVGRTEERSKDAPEEQPAPEQQEAAVRVEGEAADWAGEGETEKAEEAASVPE

Parental  AALEAKRRGER-GPAKEEPAEASASDEAEAGVVR--TRQEQPVATHTEGQDSPPSDPGKVASAEDQAAKE
          AALE.....E..G.AKEEPAEASASDEAEA.V.......EQPVATHTEGQDSPPSDPGKVASAEDQAAKE
Retrocopy AALETEKGEEKEGHAKEEPAEASASDEAEAVVLSEDEAKEQPVATHTEGQDSPPSDPGKVASAEDQAAKE

Parental  LTDTQENSAPDAEPPAQAEPAQEGPKGPPEDSKAAGDGPETGPVDQVALGTPPEEKD
          LTDTQENSAPDAEPPAQAEPAQEGPKGPPEDSKAAGDGPETG.VDQVALGTPPEEKD
Retrocopy LTDTQENSAPDAEPPAQAEPAQEGPKGPPEDSKAAGDGPETGTVDQVALGTPPEEKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1359 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1359 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010436	1 retrocopy	retro_chof_2560,
Homo sapiens	ENSG00000132780	1 retrocopy	retro_hsap_4064,
Macropus eugenii	ENSMEUG00000001037	1 retrocopy	retro_meug_1359 ,
Mus musculus	ENSMUSG00000028693	1 retrocopy	retro_mmus_1217,
Nomascus leucogenys	ENSNLEG00000014434	1 retrocopy	retro_nleu_564,
Pongo abelii	ENSPPYG00000001409	1 retrocopy	retro_pabe_3338,
Pan troglodytes	ENSPTRG00000000677	1 retrocopy	retro_ptro_2754,