RetrogeneDB ID: retro_meug_1367

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold382622:306..1354(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTMR1
• Ensembl ID: ENSMEUG00000012257
• Aliases: None
• Description: myotubularin related protein 1 [Source:HGNC Symbol;Acc:7449]

Sequence

>retro_meug_1367
CAGCCCATGGTTGGAGTGAGTGGAAAGAGAAGCAAAGAGGATAAAAAAAAAAATCTTCAAGTTATTATTTTTAATGCTCA
GTCCCATAAAATCTTCATTTTTGATGCATGACCAAGTGTTAATGCTATTACTAATAAGGCTAAGGGGGGTGATCATAATA
TTGAGGATGCTTATCAGAATGCAGAATTAATTTTTTCTGGATATACACAATATTCACATTATGAGGGAATCATTATGAAA
GTTAAAAGACATTGTATACCTGAACATTGAGGAAATGCATTGGTTATCTATCTTGGAATCTACTCATTGGTTAGAACAGA
TTAAGCTCATACTTGCTTGGGCTCTTAGGATTGCTGACAAGGTAGAGTCAGGAAAACCTCTGTGGTGGTGCACTGCAGTG
ATAGATGGGATCGAACTTCTCAATTCACCTCCTTGACTGTGCTTATGCTGGACAGTTATTATCAAATGATCAGAGCATTT
GAAATTCTTGTGGGAAAATATCGGTTGAGTTTGGACAACAATTTCAACTAAGAGTTGGCCATGGAGATAAGAACCATGAA
GATGTAGACAGATCATTTGTTGCTCTTCAGTTTATTGAGTATGTCTGGCAGATGACAAGACAATTTCCCACAGCATTTTA
ATTCAGTCAATATTTTCTGATTACCACCTTGGACCACCTATACAGCTGTTTATTTGGGGCATTCCTATGTAGCAGTAAGT
AGCAAAGAGGAAAAGAGAATCTCCCCAAAGGAACTGTATCACTGTGGTCCTATATAAATATCCAGTGTGAAGACTTGACT
AATCCCCTATTTGTGAGCTGCTCCAATCATGTCCTTTAGCCAATAACTAGCATGTGTCACCTAGAGCTTTGGGTGGATAT
TACAGTAGAAGGAACCCACTGATGAATACACAGGAGCCCATCCACAATTGATATAAAGAACTTGTTGCTAAATGAGCAGA
GCTTCAGAAAGTGGAGGAACTGCAGAGAGAAATCTCTACCTGCTCAGCCTTATCCTCAAAAAGGGCTAGTTTTCCTGTAC
AGACTGTC

Alignment

ORF - retro_meug_1367 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.83 %
• Parental protein coverage: 53.66 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  QPLVGPNDKRCKEDEKYLQTIMDANAQSHKLIIFDARQNSVADTNKAKGGGYESESAYPNAELIF-LEIH
          QP.VG...KR.KED..........NAQSHK..IFDA.....A.TNKAKGG....E.AY.NAELIF.L.IH
Retrocopy QPMVGVSGKRSKEDXXXXLQVIIFNAQSHKIFIFDA*PSVNAITNKAKGGDHNIEDAYQNAELIF>LDIH

Parental  NIHVMRESLRKLKEIVYPSIDETKWLSNVDATHWLEYIRMLLAGAVRIADKIESGK-TSVVIHCSDGWDR
          NIH.MRESL.KLK.IVY..I.E..WLS....THWLE.I...LA.A.RIADK.ESGK.TSVV.HCSD.WDR
Retrocopy NIHIMRESL*KLKDIVYLNIEEMHWLSILESTHWLEQIKLILAWALRIADKVESGK<TSVVVHCSDRWDR

Parental  TAQLTSLAMLMLDSYYRTIQGFEALVEKEWTS-FGHRFALRVGHGDDNHADADRSPIFLQFIDCVWQMTK
          T.Q.TSL..LMLDSYY..I..FE.LV.K...S.FG..F.LRVGHGD.NH.D.DRS...LQFI..VWQMT.
Retrocopy TSQFTSLTVLMLDSYYQMIRAFEILVGKYRLS<FGQQFQLRVGHGDKNHEDVDRSFVALQFIEYVWQMTR

Parental  QFPSAFEFNELFLITILDHLYSCLFGTFLCNCEQQRLKEGVNTKTISLWSYINSQLDEFSNPFYVNYENH
          QFP.AF.F...FLIT.LDHLYSCLFG.FLC....QR.KE.....T.SLWSYIN.Q.....NP..V...NH
Retrocopy QFPTAF*FSQYFLITTLDHLYSCLFGAFLCSSK*QRGKENLPKGTVSLWSYINIQCEDLTNPLFVSCSNH

Parental  VLYPVASVNHLELWVN-YYVRWNPRMRPQMPIHQNLKELLVIRSELQKRVEDLQREAATRSISSSSDRGS
          VL.P..S..HLELWV..YY.R.NP.M..Q.PIH...KEL.....ELQK.VE.LQRE..T.S...SS.R.S
Retrocopy VL*PITSMCHLELWVD<YYSRRNPLMNTQEPIHN*YKELVAK*AELQK-VEELQREISTCS-ALSSKRAS

Parental  SPSHSV
          .P...V
Retrocopy FPVQTV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1367 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1367 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000013433	1 retrocopy	retro_dnov_2271,
Equus caballus	ENSECAG00000007323	1 retrocopy	retro_ecab_527,
Macropus eugenii	ENSMEUG00000012257	1 retrocopy	retro_meug_1367 ,