RetrogeneDB ID:

retro_meug_1477

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold42058:42679..43255(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000004885
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_1477
GCTATCAAGGAATCTGAAAAAGTAAGAGATCAAGCACAAAGGAGGGTGATGAAGGGTGTTGATGATTTAGATTTCTTTAT
TGGGGATGAAGCAATAGAAAAGCCGACTTCTGCAACAAAGTGGCCAATCTGCCATGGTATAGTTGAAGATTGGGACTTGA
TGGAGAGATTTATGGAACAAGTGGTCTTTAAATACCTAAGGGCAGAACATGAAGATCATTATTTTCTTTTGACTGAACCT
CCTCTAAATACACCAGAAAACAGGGAATATACAGCTGAAATTATGTTTGAATGCTTTATTGTTCCAGGCCTATACATAGC
CGTACAGGCTGCCCTTGCTTTAGGTGCATCTTGGACATCAAGACAAGTAAGAGAGTGGACACTGACTGGTACAGTTATAG
ACAGTGGAGATGGTGTCACTCGTGTCATTCCAGTGGCTGAAGGGTATGATATTGGAAGCTGTATCAAGCACATGCCAATT
TCTGGAAGAGATATAACATATTTTATTCAGCAGTTATTGAGAGAATGAGAGGTAGGAATTCCTCCTGAACAGTTCCTGAA
AACAACTAAGGCAGTA

ORF - retro_meug_1477 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.85 %
Parental protein coverage: 58.95 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEP
AI.ES.KV.DQAQRRV..GVDDLDFFIGDEAI.KPT.ATKWPI.HGI.EDWDLMERFMEQV.FKYLRAE.
RetrocopyAIKESEKVRDQAQRRVMKGVDDLDFFIGDEAIEKPTSATKWPICHGIVEDWDLMERFMEQVVFKYLRAEH
ParentalEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVT
EDHYFL.TEPPLNTPENREY.AEIMFE.F.VPGLYIAVQA.LAL.ASWTSRQV.E.TLTG.VIDSGDGVT
RetrocopyEDHYFLLTEPPLNTPENREYTAEIMFECFIVPGLYIAVQAALALGASWTSRQVREWTLTGTVIDSGDGVT
ParentalHVIPVAECYVIGSCIKHIPIAGRDITYFIQQLL-EREVGIPPEQSLETAKAI
.VIPVAE.Y.IGSCIKH.PI.GRDITYFIQQLL.E.EVGIPPEQ.L.T.KA.
RetrocopyRVIPVAEGYDIGSCIKHMPISGRDITYFIQQLLRE*EVGIPPEQFLKTTKAV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1477 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1477 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000077305 retrocopies
Dasypus novemcinctus ENSDNOG000000192882 retrocopies
Homo sapiens ENSG000001336277 retrocopies
Macropus eugenii ENSMEUG00000004885 5 retrocopies
Nomascus leucogenys ENSNLEG000000156881 retrocopy
Oryctolagus cuniculus ENSOCUG000000004591 retrocopy
Otolemur garnettii ENSOGAG000000032492 retrocopies
Pongo abelii ENSPPYG000000182061 retrocopy
Pan troglodytes ENSPTRG000000198978 retrocopies
Tupaia belangeri ENSTBEG000000116472 retrocopies
Tursiops truncatus ENSTTRG000000163342 retrocopies



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