RetrogeneDB ID: | retro_pabe_2460 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:107423537..107424502(+) | ||
Located in intron of: | ENSPPYG00000014969 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTR3B | ||
Ensembl ID: | ENSPPYG00000018206 | ||
Aliases: | None | ||
Description: | ARP3 actin-related protein 3 homolog B (yeast) [Source:HGNC Symbol;Acc:17256] |
Percent Identity: | 75.91 % |
Parental protein coverage: | 77.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | YTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIED |
Y..LG.AGNTEP.F.I.SCI.IRESAKVVD.AQRR.LRGVDDLDFFI.DEAI.K..YA.KW.I.HGI.ED | |
Retrocopy | YSELGHAGNTEP*FTILSCISIRESAKVVDKAQRRMLRGVDDLDFFIQDEAIEKSMYASKWSI*HGITED |
Parental | WDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYL-AEIMFESFNVPGLYIAVQAVLALAASWT |
WD.MERFMEQVVFKYL.AE.EDHYFLMTE.PLNT.EN.E...AEIMFE.FNVPG.YIA.Q.VLALA.SWT | |
Retrocopy | WDIMERFMEQVVFKYL*AESEDHYFLMTELPLNTLENTEHF>AEIMFELFNVPGFYIAIQEVLALAVSWT |
Parental | SRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETA |
S.QV.E..L..IVID.GDGVTHV.PV..GYVIGSCI.HI.I.G.D..YFIQQLLREREVGIP.EQSLET. | |
Retrocopy | SQQVSECMLMSIVIDKGDGVTHVLPVV-GYVIGSCINHILIVG-DTVYFIQQLLREREVGIPLEQSLETT |
Parental | KAIKEKYCYICPDIVKEFAKYDVDPRKWIKQYTGINAINQKKFVIDVGYERFLGPEIFFHPEFANPDFME |
KAIKEKYCYICPDIVKEFAKYDV...KWIKQYTGIN.INQ.KF.IDVGY.RF...EIFF.PEFANPDFME | |
Retrocopy | KAIKEKYCYICPDIVKEFAKYDVNSWKWIKQYTGINVINQEKFIIDVGYKRFPQLEIFFYPEFANPDFME |
Parental | SISDVVDEVIQNCPI-DVRRPLYKNVVLSGGSTMF-RDFGRRLQRDLK |
SI..VVDE.....P..DV.RPLYK.VVLS.G.T.F.R.F...LQRDLK | |
Retrocopy | SILNVVDE-YKTVPL<DVHRPLYKTVVLSRGLTIF<RGFEPQLQRDLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 78 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .58 RPM |
SRP007412_heart | 0 .00 RPM | 9 .90 RPM |
SRP007412_kidney | 0 .03 RPM | 11 .30 RPM |
SRP007412_liver | 0 .00 RPM | 8 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2966 |
Pan troglodytes | retro_ptro_2007 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007730 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019288 | 2 retrocopies | |
Homo sapiens | ENSG00000133627 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000004885 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015688 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012798 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018206 | 1 retrocopy |
retro_pabe_2460 ,
|
Pan troglodytes | ENSPTRG00000019897 | 8 retrocopies |