RetrogeneDB ID: | retro_meug_1518 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold43356:13387..13855(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MCTS1 | ||
Ensembl ID: | ENSMEUG00000014328 | ||
Aliases: | None | ||
Description: | malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357] |
Percent Identity: | 72.44 % |
Parental protein coverage: | 88.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FDEKENVFNSILLKTSVVKDVKNQLIAQLPRIEPWLNQIMPEKDPVKIVKCHKQIEILTVNGELLFFRQK |
FDEKENV.N.I.LKTSV.K..K.QL..Q.P.IEPWLNQIMP.KDPVKIV.CH..IEILTVNGELLFFRQ. | |
Retrocopy | FDEKENVSNCIQLKTSVIKGIKSQLLEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQR |
Parental | EGTFYPTLRLLHKYPLILPHQQIDKGSIRCILNGANILCSCLTSQGGKLSPAAPGTVVAVMAEGKQHALS |
EG.F.PTLRLLHKYP..LPHQ..DKG.I...L.GANI.C..LTS.G..L.PAA..TVVA.MAEGKQHAL. | |
Retrocopy | EGPFFPTLRLLHKYPFLLPHQRVDKGAIKFVLSGANIMCPGLTSPGARLYPAAADTVVAIMAEGKQHALC |
Parental | IGVMKMSAEDIERNNQ |
.GVMK..AEDIER.N. | |
Retrocopy | VGVMKLAAEDIERVNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000034992 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018545 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015462 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014328 | 1 retrocopy |
retro_meug_1518 ,
|
Myotis lucifugus | ENSMLUG00000015101 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010354 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001407 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000355 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014315 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011496 | 2 retrocopies |